Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq211 358 1e-93 seq1201 266 6e-66 >seq211 Length=153984 Score = 358 bits (396), Expect = 1e-93 Identities = 1072/1623 (66%), Gaps = 80/1623 (5%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || |||||||| | || |||||||||| | ||||| || ||||||||||||||||| Sbjct 108013 ACGGTAAACTGAATGGGGGCAGCAGCAGCTTGCGTGCGCAGGTAGTACATGCCGGTCTTC 108072 Query 212613 AGGCCCTTGCC-CCAGCCGTGC-ATGTGCATTGCT-GTGAGTTTCTTCAGCTTAATATTC 212669 || |||| || |||||| ||| | ||||| ||| |||| |||| | || || Sbjct 108073 AG-CCCTAGCTTCCAGCC-TGCGAAATGCAT-GCTAGTGA---TCTTGCCC---ATGGTC 108123 Query 212670 TGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCC 212729 |||| | || || || | ||| |||||||| |||||| || || | | | Sbjct 108124 GGGTCTT--TCATG-------TGAATGTTGAGGGACTGGGACTGGTCGATAAAGGCGCCA 108174 Query 212730 CTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATT 212789 | ||| |||||||| | | || | ||||| | ||||| ||||| ||| | | Sbjct 108175 CGGTCGGCGGCCATCTGAACGACGGTACGTTGGGAAATTTCCCAGACGGTTTTGTACAGG 108234 Query 212790 TCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGC 212849 | |||| || | || | | ||| ||||||||||| || || || ||||| Sbjct 108235 GCCTTGACCTCGGCGGGAATGTTGGGAATGTTCTGCACGGAGCC-------ATTCTCAGC 108287 Query 212850 TGCAG-GCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902 | ||| |||| | || ||| | |||| || | ||| ||||| || Sbjct 108288 AATAATGCGGTTCTTCATGGCATCAGACCACAAGCCCATGTCGACGAGGTCCTTGAGGAG 108347 Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962 ||||||||| | ||| || ||||| | | || | | |||||| | ||| || || Sbjct 108348 CCAAGGGTTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGT 108407 Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 ||| ||||| | || |||||||| ||||||||||| | ||| ||||| || |||||||| Sbjct 108408 GTAAGGCTCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGG 108467 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082 || || || | ||||| | ||| || |||| ||| | | || |||| Sbjct 108468 GGCGACGAGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCA 108527 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| ||||| | ||| || |||||||||| | || | || ||| Sbjct 108528 GTCCCAG---------AGGTCGGAGGGCTTGACTCCCCACATGTCATATTGAAGGACGCC 108578 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | || ||| ||| | ||||| || |||| ||| | ||||||||| |||| ||| Sbjct 108579 CTGTGAGACTGGGGAGCCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTAGCT-GCA 108637 Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG- 213260 ||| || ||||||| ||||||||| || || |||| | |||| || ||| | Sbjct 108638 CTGACATGGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAG-TTCACGA 108696 Query 213261 GCCTCTGGGGACGTGAAGGGCA-TCATCATGCGTTGGAACACATCAGCCAGCCCCTGGAC 213319 ||||| || ||| ||| |||| || | || | || ||||||| || |||||||| Sbjct 108697 GCCTCAGGCGACTCGAACGGCAGTCGCAAAGCCAAG-AATGCATCAGCAAGACCCTGGAC 108755 Query 213320 CCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAA 213378 |||| ||| ||||| | || | || ||| ||| |||| |||| | ||| || Sbjct 108756 ACCGAGGCCAATGGGCCGATGGCGCATGTTGCTGTTGCGAGC-CTCCGGGACGGGATAGT 108814 Query 213379 AGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGT 213438 |||| |||||||||| | || |||||||| | || | |||||||| | || | Sbjct 108815 GGTTGACGTCGATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATCGTGTAGCT 108874 Query 213439 ACTCG---TGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGG 213495 || | | || || ||| || || | ||| || ||| || || | | | Sbjct 108875 TCTGGAAGTCATAGATTCCGTCGCT---GTAGTTCACGAAAGAAGGGAGAGCAAGGGACG 108931 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| |||||| ||||| ||||| | || | | | |||||| ||||| || ||||| |||| Sbjct 108932 CCAAGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAAAGGT 108991 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 || || ||| |||||||| || |||| ||||| ||| ||||||| |||||||| Sbjct 108992 TGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATGATCCTTGT 109051 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTA 213673 |||||||| | ||| |||||||| ||||| | | || || ||| |||||| | Sbjct 109052 AGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAAT--GGCATACCAGAGCTT 109109 Query 213674 CCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCT 213732 | |||||| | | || | | | | | | || |||||||| ||||| | Sbjct 109110 CTGGGCCTTCATG----GTCTTTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGG 109165 Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGC 213792 | | |||||| | ||| || | | || ||||| || ||||||||| || Sbjct 109166 CTTCGAATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCAGTG 109225 Query 213793 TCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTG 213851 ||||||| |||| | |||| |||| || |||||| || || |||| ||| || ||| | Sbjct 109226 TCCAGTCACCGTTCTTCTCC-ACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGG 109284 Query 213852 AACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCA 213911 || ||||| | || | ||| ||| || ||| ||||| || || | ||| || Sbjct 109285 AAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCG 109344 Query 213912 AAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCG 213968 |||| ||| || ||||| ||||| | ||||||||||||||| || | || | ||||| Sbjct 109345 AAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCA 109404 Query 213969 CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAG--GACGGGTACCAGCCCGT 214026 |||||||| || | ||| ||||||||| ||| || | ||||| || |||| Sbjct 109405 CCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACA--CCGT 109462 Query 214027 TGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGA 214084 |||| || ||||| || || || || ||||| | ||| | | | || ||| | Sbjct 109463 TGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACATTTA 109522 Query 214085 GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGAT 214144 || || ||||| ||||| || || |||||||||||| | ||| ||| || ||| Sbjct 109523 GA--CCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGAT 109580 Query 214145 GCC 214147 ||| Sbjct 109581 GCC 109583 >seq1201 Length=295393 Score = 266 bits (294), Expect = 6e-66 Identities = 501/727 (69%), Gaps = 11/727 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || | | ||||||||||| Sbjct 156210 CTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAGATGTTCTC 156269 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || ||| |||| ||| | ||| || Sbjct 156270 CATGAAGTCGAAGGGGTTGGCCGATTTGTAGACCT-TGTCGTTGCCGAGAGCGACCAACA 156328 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||||||||||| ||| ||| || ||||||||| | ||||| Sbjct 156329 GACGATCAGCGACGAACTCGATGTATTGCTTCATCAGGTTGGAGTTCATGCCCAGGAGGG 156388 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| ||||| || || ||||| | ||| |||| || || || | | ||| | Sbjct 156389 CGCAAGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGCATCGACGATAATAT 156448 Query 48078 GCTTAA-CGCGGGACT-CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || || | | | | ||| || || | | ||||| | || || | |||||| Sbjct 156449 CCTCAATCACCTGCTTGCTGGGGCGGTGCTTC--AGGTGAGAG---TACAGAAGGCAGGC 156503 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | || || || ||| ||||||| ||||||||||| ||||| || Sbjct 156504 AAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCGGG 156563 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || ||||||||||| || | ||||||| || |||||||||||| Sbjct 156564 CATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATGCC 156623 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || || || || ||| | || |||| | | || |||| | |||||| Sbjct 156624 CTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTGGACTTTGTGTCCGTGATCCA 156683 Query 48316 G-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| |||||||| |||||||| |||||| || || || || ||||| ||||| Sbjct 156684 GCGCAAG-GCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTGAAGA 156742 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | | | | || | | ||| || ||||| || || | ||| |||| | Sbjct 156743 GATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGG 156802 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | ||||| || ||||||||| ||||||||| | ||||| ||||| | Sbjct 156803 AGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGA 156862 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 |||| ||||| | ||| | ||| ||||||||||| || || || ||||| || |||| Sbjct 156863 CTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGCGAAGA 156922 Query 48555 AGGCAAG 48561 |||| || Sbjct 156923 AGGCGAG 156929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931514588533760