Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq211 260 3e-64 seq1201 206 5e-48 >seq211 Length=153984 Score = 260 bits (288), Expect = 3e-64 Identities = 841/1286 (65%), Gaps = 61/1286 (5%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || |||||||||||||||||||| |||||| ||||||| ||| || | ||||| || Sbjct 108646 GTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGT-TCACGAGCCTCAGG 108704 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 || ||| |||| |||| | || | || || || ||||| || |||| || Sbjct 108705 CGACTCGAACGGCAGTCGCAAAGCCAAGAATGCATCAGCAAGACCCTGGACACCGAGGCC 108764 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||||| || | | ||||| | ||| || || || |||||||| ||||||| Sbjct 108765 AATGGGCCGATGGCGCATGTTGCTGTTGCGA--GCCTCCGGGACGGGATAGTGGTTGACG 108822 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 ||||| | | || ||||| || | || | || ||| ||||||||| Sbjct 108823 TCGATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATCGTGTAGCTTCTGGAAG 108882 Query 221654 TTGAACACCAACTCGCCGCCGTCG-TGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 | || | | |||||| || || | ||| |||| || |||| | Sbjct 108883 T-------CA--TAGATTCCGTCGCTGTAG----TTCACGAAAGAAGGGAGAGCAAGGGA 108929 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||| ||| || ||||| |||||||| | | |||| ||||| || || || || Sbjct 108930 CGCCAAGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAAAG 108989 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || ||||| || || | || || || |||||| |||||| ||||| Sbjct 108990 GTTGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATGATCCTT 109049 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||||||||| || || ||| ||||| ||| ||| | ||||| | |||||| | Sbjct 109050 GTAGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGAGCT- 109108 Query 221893 TCTGGCGCT-CACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTAT 221945 ||||| || || ||| | |||| || | | |||| ||| || ||| || | Sbjct 109109 TCTGGGCCTTCATGGTCTTTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTT 109168 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 || | | || || || ||| | || || || ||| | |||||||| Sbjct 109169 CGA---------ATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACA 109219 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 |||| |||||| ||| | | || | || ||||||||| || |||||||| || | Sbjct 109220 TCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGG 109279 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || || || | || || ||||||| ||||| ||| || | || ||||||| Sbjct 109280 CGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAA 109339 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| || | ||| || ||||| ||||| || |||| ||| | || ||||| ||||||| Sbjct 109340 ACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGT 109399 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGT--CGGTACCA 222242 |||||||||| || | ||| | | | |||||||| ||| || | |||| || Sbjct 109400 TGCCACCCTGGTCGA-CATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACA 109458 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGG 222302 |||||||| || |||||||| ||||| | || ||| | || | | || Sbjct 109459 --CCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCAC---GGATGC-GG 109512 Query 222303 CAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 ||||| || || || ||||| ||| || |||||||||||| |||| |||||| Sbjct 109513 TGGACATTTAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTG 109572 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||||||||| |||||||| ||||| | || | ||||| || ||||||| ||| Sbjct 109573 TCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGT 109632 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | || | || |||||| |||| ||||| ||||| || ||| | || ||| Sbjct 109633 GCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTCGAC 109692 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCG 222535 |||| | ||| ||||| | ||| | | | | ||| ||| || ||| | ||| Sbjct 109693 ATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGA---TGCCAACGGCA 109749 Query 222536 CATCTCATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGT 222593 | |||| ||||| ||| || ||||| || || | |||| |||| || | Sbjct 109750 ACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGA--AGAT 109807 Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCA 222653 | ||| | |||| ||||| || || ||||| | | || ||||| | | ||| ||| | Sbjct 109808 AGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAAACGA 109867 Query 222654 CGGCGGCGTCCAGCTCCGACTTGTGC 222679 ||| | || |||||| ||||||| Sbjct 109868 TGGCAGAATCAAGCTCCTCCTTGTGC 109893 >seq1201 Length=295393 Score = 206 bits (228), Expect = 5e-48 Identities = 558/853 (65%), Gaps = 16/853 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| |||||| || || ||||||||| || Sbjct 157055 ATTTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCTGAGGAGATTGATTTG 156996 Query 25537 GCCAAGGACATGGACGGCTGGTACG-CTCTATCCA--AAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || Sbjct 156995 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 156936 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || || || || || || ||||| ||| ||| | Sbjct 156935 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACCTGGTTGAGCGT 156876 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | | ||||| ||| | ||||| || |||||||| |||||||| || Sbjct 156875 TTCTCTGGCGAAGTCCAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATG 156816 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| || || ||||| || || ||||||| || Sbjct 156815 GAGAACATTCACTCCGAGACTTACTCC---CTTCTCATCGACACCTACATTAAGGAGCCT 156759 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||| || | || || |||||||| ||| ||| ||||| | |||||| Sbjct 156758 GCCCAGCGTACCTATCTCTTCAACGCCATCGACACCATCCCCTGCATCCGTAAGAAGGCT 156699 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| || ||||||| | | || | | | || || | | |||| || || || Sbjct 156698 GACTGGGCCTTGCGCTGGATCA-CGGACACAAAGTCCACCTTCGCCCAGCGCCTCGTTGC 156640 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||| || || ||||||||||| ||||||||| | || || |||||||||||||||| Sbjct 156639 CTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCAA 156580 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || ||||||||| || ||| ||||||||||||||| | | || ||||| Sbjct 156579 GAAGCGTGGTCTCATGCCCGGTCTAACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGG 156520 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 |||||||| || ||||||||||| || ||| | ||| || ||| || || Sbjct 156519 TCTCCACACCGACTTTGCCTGCCTTCTGTACTC---TCACCTGAAGCAC-CGCCCCAGCA 156464 Query 26070 AG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || || | | ||| ||| || ||||| |||||||| | ||||| | Sbjct 156463 AGCAGGTGATTGAGGATATTATCGTCGATGCTGTCAAGATCGAGCAAGAGTTCCTGACCG 156404 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 ||||||||||| || || |||| |||||||| |||| Sbjct 156403 AGGCTCTGCCTTGCGCCCTCCTGGGCATGAACTCCAACCTGATGAAGCAATACATCGAGT 156344 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 || || || | |||| || | || || || || |||||| || | |||| Sbjct 156343 TCGTCGCTGATCGTCTGTTGGTCGCTCTCGGCAACGACAAGGTCTACAAATCGGCCAACC 156284 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | |||||||| ||||| ||||| || | | || ||||||||||||||||| ||| | | Sbjct 156283 CCTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTG 156224 Query 26309 TCGGCGACTATCA 26321 ||| |||||| || Sbjct 156223 TCGCCGACTACCA 156211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928826641084160