Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq235 188 5e-42
seq632 116 2e-20
seq428 114 8e-20
seq1497 105 4e-17
seq1544 96.9 2e-14
>seq235
Length=668
Score = 188 bits (208), Expect = 5e-42
Identities = 400/589 (68%), Gaps = 10/589 (2%)
Strand=Plus/Minus
Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536
|||| | || | || ||||| ||||||||| | || || || | | || | |||
Sbjct 584 AGCAATCAGGAGGCTGAGAACGGCTTGTGAAAGAGCAAAAAGAACATTATCAAGTAGTAC 525
Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTAC 475596
| | | ||| ||| | || || | || || |||| |||| |||| || ||
Sbjct 524 AGAGGCGAGTGTAGAAATAGACTCATTGTTCGAGGGAACAGATTTCTATACAAAAATAAC 465
Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656
||| || | ||||||||| || ||| ||| | |||||| |||| | ||||| || ||
Sbjct 464 AAGAGCAAGATTTGAAGAAATGTGTGGTGACTTGTTTAGAGCAACATTAGAACCAGTAGA 405
Query 475657 ACAAGTTCTCA-GAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAG 475715
| ||| || | | ||| ||||| | || ||| | |||| | ||||| ||||
Sbjct 404 A-AAGGCCTTACGTGATGCTAAAATGGATAAACGTAGTATTAATGAGGTCGTTCTGGTAG 346
Query 475716 GAGGTTCAACAAGAATTCCAAAAATA-AGAGAAATGCTTTCATCATATTTTAATGGTAAA 475774
|||| || ||||| || ||||||||| ||| ||||| | || || | | ||||| |||
Sbjct 345 GAGGCTCCACAAGGATACCAAAAATACAGA-AAATGTTGACAGAATTTATGAATGGAAAA 287
Query 475775 AAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834
| |||||| || |||||||||||||||||||| || ||||| |||||||| || ||
Sbjct 286 GACTTAAATAAATCAGTAAATCCTGATGAAGCTGTGGCCTATGGTGCTGCTGTACAGGCT 227
Query 475835 GCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTT---GTTGACGTA 475891
||||||||||| ||| | || | || || || ||| ||||||| || || ||
Sbjct 226 GCTATTTTATCTGGTGACTC--TAGTGACAC-AATTAAAGATGTACTTTTAGTAGATGTC 170
Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951
|||| | ||| | || | ||||| | ||||| ||||||| || |||||||| ||
Sbjct 169 GCTCCGTTGTCACTCGGAATAGAAACTGCAGGAGGTGTTATGACCAAACTTATTGAGAGG 110
Query 475952 AATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA 476011
||| || || ||| ||| ||| || |||| | || ||||| || ||||| ||
Sbjct 109 AATTCTAAAATACCAACTAAAGCTTCACAAACATTTACAACATATTCAGACAATCAGCCA 50
Query 476012 ACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATA 476060
| || | || || | ||||| || || | | | ||||||||||
Sbjct 49 GCAGTCAATATTCAGGTATTTGAGGGGGAGCGTGTAATGACTAAAGATA 1
>seq632
Length=500
Score = 116 bits (128), Expect = 2e-20
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || ||||||||||| ||| || || | || || || | | ||
Sbjct 244 ACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGT 185
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| |||||| | || || |||||||| || | | ||||| ||||| ||||||||
Sbjct 184 TCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCC 125
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||| ||||| |||||||| ||| ||| ||| ||||||||| || | | |||||
Sbjct 124 TTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAG 65
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || ||||| || ||||| ||||| ||||| || ||
Sbjct 64 AGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTG 26
>seq428
Length=571
Score = 114 bits (126), Expect = 8e-20
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||| | ||| ||||||||||| ||| ||| || | ||| ||||| || | ||
Sbjct 344 ACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGT 403
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||||||||| ||||| ||||| ||||| | ||| || ||||| ||||| || ||
Sbjct 404 GCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACC 463
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729
||| |||||||||||||| |||||| || || || || || | | | || |
Sbjct 464 TTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGA-CCTCGA 522
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| || ||||| ||||| || || || |||||||| ||
Sbjct 523 GGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTG 562
>seq1497
Length=941
Score = 105 bits (116), Expect = 4e-17
Identities = 341/524 (65%), Gaps = 39/524 (7%)
Strand=Plus/Minus
Query 698482 TTATTGTTATGTGTGATACATATACTCCAAGTGGAGAACCTTTACCAACAAATCATAGAC 698541
|| |||| || |||||| || |||||| ||||||||| ||||||||||| | |||
Sbjct 871 TTCTTGTGATTTGTGATGTTTACACTCCAGCTGGAGAACCATTACCAACAAACAAGAGAT 812
Query 698542 ATGATGCTGATATTATCTTTAATAAATACAAGAA--------TGAAAAACCTTGGTACGG 698593
| |||||| | || || | | | | || |||| |||| ||||| ||
Sbjct 811 ACAATGCTGCCAAAATTTTCAGTCAC--CCTGATGTTGCTGCTGAAGAACCATGGTATGG 754
Query 698594 ATTGGAACAAGAATAT--TTTATT---------TATGACTG---CATAAGAAATTTACCT 698639
| |||||||| ||| |||||| ||| | | ||| || || |||
Sbjct 753 TATTGAACAAGAGTATACTTTATTGCAAAAAGATATCAATTGGCCATTAGG--TTGGCCT 696
Query 698640 GTTGGATTTGAT--CCAAGTGGAAAACAAGGACAATATTATTGTAGTGTAGGTGGAAATA 698697
|||| | ||| ||| |||||||| || | |||||| ||| | |||| |||
Sbjct 695 ATTGG--TGGATTTCCA---GGAAAACAGGGTCCATATTACTGTGGAACTGGTGCTGATA 641
Query 698698 ATTGTTTTGGTAGAATTTTAGTGGATGAACATTTGGAAGCTTGTTTGTATGCTGGAATAA 698757
| || ||| | | || |||| ||||| |||| ||| | | ||||||||| |
Sbjct 640 AAGCTTATGGACGTGACATTGTTGATGCACATTACAAAGCATGTATTTTTGCTGGAATTA 581
Query 698758 AAATATCAGGAACAAATGTTGAGGTTGCGCCAGGTCAACACGAATTTCAAATTGGACCAG 698817
| || || | |||| |||||| ||| ||||| ||||||||| |||| ||
Sbjct 580 ACATTAGTGGCATCAATGCAGAGGTTATGCCGGGTCAGTGGGAATTTCAAGTTGGCCCTT 521
Query 698818 TTGAAGGTATTGATGTTGCAGATCAATTATGGATTGCAAGATATATTTTGGAAAAATTAT 698877
|| |||||| || || |||| | ||||| ||| | |||||| | || | ||
Sbjct 520 CTGTTGGTATTTCTGCTGGAGATGAGATATGGGCTGCTCGCTATATTCTAGAGAGGATAA 461
Query 698878 CAGAAAATCATGGGAAATATATTGTTTA---TGATCCAAAACCTCTTAAAGGAGATTGGA 698934
|||| | | ||| | | |||||| ||||||||| ||| || |||||||||||
Sbjct 460 CAGAGATTGCTGG---AGTTGTTGTTTCATTTGATCCAAAGCCTATTCCAGGAGATTGGA 404
Query 698935 ATGGATCAGGATGTCATACTAATTTCAGTACAGAATCAATGAGA 698978
||||| | ||| |||| | || || || || |||||||||||
Sbjct 403 ATGGAGCTGGAGCTCATGCAAACTTTAGCACCAAATCAATGAGA 360
>seq1544
Length=892
Score = 96.9 bits (106), Expect = 2e-14
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||||||||| || ||| || | || || ||||| |||||
Sbjct 614 ACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGT 673
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| || || || || ||||| || || || |||||||| || ||||| ||||||||
Sbjct 674 ACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCC 733
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||| || ||||| ||||| || || || |||| | | | || |
Sbjct 734 TTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGA-CCTCGA 792
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || ||||| || || |||||||| |||||
Sbjct 793 GAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTG 832
Score = 95.1 bits (104), Expect = 8e-14
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614
||||| || ||||| ||||| || || || | ||| |||||||| ||||| ||
Sbjct 162 AGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTT 221
Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674
||||| || ||||| || ||||| || | | || ||||| |||||||| || |||
Sbjct 222 CCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCC 281
Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733
|| || || ||||| || || ||||| || || | | | | | | | |||||
Sbjct 282 TTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACCT-CGAGGGT 340
Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||||||||||||| |||||||| || || || ||
Sbjct 341 AATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTG 376
Score = 93.3 bits (102), Expect = 3e-13
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| | ||||| ||||| || ||| || | || || ||||| | |||
Sbjct 386 ACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGT 445
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| ||| || || |||||||| ||||| || | | || ||||| ||||| |||||
Sbjct 446 CCTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCC 505
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||| || || ||||| || || || || ||||||| | | || || |
Sbjct 506 TTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAA-CCTCGA 564
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| || ||||| |||||||| |||||||| || || ||
Sbjct 565 GGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTG 604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268112112451472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |