Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq235 188 5e-42 seq632 116 2e-20 seq428 114 8e-20 seq1497 105 4e-17 seq1544 96.9 2e-14 >seq235 Length=668 Score = 188 bits (208), Expect = 5e-42 Identities = 400/589 (68%), Gaps = 10/589 (2%) Strand=Plus/Minus Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536 |||| | || | || ||||| ||||||||| | || || || | | || | ||| Sbjct 584 AGCAATCAGGAGGCTGAGAACGGCTTGTGAAAGAGCAAAAAGAACATTATCAAGTAGTAC 525 Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTAC 475596 | | | ||| ||| | || || | || || |||| |||| |||| || || Sbjct 524 AGAGGCGAGTGTAGAAATAGACTCATTGTTCGAGGGAACAGATTTCTATACAAAAATAAC 465 Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656 ||| || | ||||||||| || ||| ||| | |||||| |||| | ||||| || || Sbjct 464 AAGAGCAAGATTTGAAGAAATGTGTGGTGACTTGTTTAGAGCAACATTAGAACCAGTAGA 405 Query 475657 ACAAGTTCTCA-GAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAG 475715 | ||| || | | ||| ||||| | || ||| | |||| | ||||| |||| Sbjct 404 A-AAGGCCTTACGTGATGCTAAAATGGATAAACGTAGTATTAATGAGGTCGTTCTGGTAG 346 Query 475716 GAGGTTCAACAAGAATTCCAAAAATA-AGAGAAATGCTTTCATCATATTTTAATGGTAAA 475774 |||| || ||||| || ||||||||| ||| ||||| | || || | | ||||| ||| Sbjct 345 GAGGCTCCACAAGGATACCAAAAATACAGA-AAATGTTGACAGAATTTATGAATGGAAAA 287 Query 475775 AAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834 | |||||| || |||||||||||||||||||| || ||||| |||||||| || || Sbjct 286 GACTTAAATAAATCAGTAAATCCTGATGAAGCTGTGGCCTATGGTGCTGCTGTACAGGCT 227 Query 475835 GCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTT---GTTGACGTA 475891 ||||||||||| ||| | || | || || || ||| ||||||| || || || Sbjct 226 GCTATTTTATCTGGTGACTC--TAGTGACAC-AATTAAAGATGTACTTTTAGTAGATGTC 170 Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951 |||| | ||| | || | ||||| | ||||| ||||||| || |||||||| || Sbjct 169 GCTCCGTTGTCACTCGGAATAGAAACTGCAGGAGGTGTTATGACCAAACTTATTGAGAGG 110 Query 475952 AATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA 476011 ||| || || ||| ||| ||| || |||| | || ||||| || ||||| || Sbjct 109 AATTCTAAAATACCAACTAAAGCTTCACAAACATTTACAACATATTCAGACAATCAGCCA 50 Query 476012 ACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATA 476060 | || | || || | ||||| || || | | | |||||||||| Sbjct 49 GCAGTCAATATTCAGGTATTTGAGGGGGAGCGTGTAATGACTAAAGATA 1 >seq632 Length=500 Score = 116 bits (128), Expect = 2e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || ||||||||||| ||| || || | || || || | | || Sbjct 244 ACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGT 185 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| |||||| | || || |||||||| || | | ||||| ||||| |||||||| Sbjct 184 TCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCC 125 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||| |||||||| ||| ||| ||| ||||||||| || | | ||||| Sbjct 124 TTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAG 65 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| ||||| ||||| || || Sbjct 64 AGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTG 26 >seq428 Length=571 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| | ||| ||||||||||| ||| ||| || | ||| ||||| || | || Sbjct 344 ACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGT 403 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||||||| ||||| ||||| ||||| | ||| || ||||| ||||| || || Sbjct 404 GCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACC 463 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||| |||||||||||||| |||||| || || || || || | | | || | Sbjct 464 TTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGA-CCTCGA 522 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || ||||| ||||| || || || |||||||| || Sbjct 523 GGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTG 562 >seq1497 Length=941 Score = 105 bits (116), Expect = 4e-17 Identities = 341/524 (65%), Gaps = 39/524 (7%) Strand=Plus/Minus Query 698482 TTATTGTTATGTGTGATACATATACTCCAAGTGGAGAACCTTTACCAACAAATCATAGAC 698541 || |||| || |||||| || |||||| ||||||||| ||||||||||| | ||| Sbjct 871 TTCTTGTGATTTGTGATGTTTACACTCCAGCTGGAGAACCATTACCAACAAACAAGAGAT 812 Query 698542 ATGATGCTGATATTATCTTTAATAAATACAAGAA--------TGAAAAACCTTGGTACGG 698593 | |||||| | || || | | | | || |||| |||| ||||| || Sbjct 811 ACAATGCTGCCAAAATTTTCAGTCAC--CCTGATGTTGCTGCTGAAGAACCATGGTATGG 754 Query 698594 ATTGGAACAAGAATAT--TTTATT---------TATGACTG---CATAAGAAATTTACCT 698639 | |||||||| ||| |||||| ||| | | ||| || || ||| Sbjct 753 TATTGAACAAGAGTATACTTTATTGCAAAAAGATATCAATTGGCCATTAGG--TTGGCCT 696 Query 698640 GTTGGATTTGAT--CCAAGTGGAAAACAAGGACAATATTATTGTAGTGTAGGTGGAAATA 698697 |||| | ||| ||| |||||||| || | |||||| ||| | |||| ||| Sbjct 695 ATTGG--TGGATTTCCA---GGAAAACAGGGTCCATATTACTGTGGAACTGGTGCTGATA 641 Query 698698 ATTGTTTTGGTAGAATTTTAGTGGATGAACATTTGGAAGCTTGTTTGTATGCTGGAATAA 698757 | || ||| | | || |||| ||||| |||| ||| | | ||||||||| | Sbjct 640 AAGCTTATGGACGTGACATTGTTGATGCACATTACAAAGCATGTATTTTTGCTGGAATTA 581 Query 698758 AAATATCAGGAACAAATGTTGAGGTTGCGCCAGGTCAACACGAATTTCAAATTGGACCAG 698817 | || || | |||| |||||| ||| ||||| ||||||||| |||| || Sbjct 580 ACATTAGTGGCATCAATGCAGAGGTTATGCCGGGTCAGTGGGAATTTCAAGTTGGCCCTT 521 Query 698818 TTGAAGGTATTGATGTTGCAGATCAATTATGGATTGCAAGATATATTTTGGAAAAATTAT 698877 || |||||| || || |||| | ||||| ||| | |||||| | || | || Sbjct 520 CTGTTGGTATTTCTGCTGGAGATGAGATATGGGCTGCTCGCTATATTCTAGAGAGGATAA 461 Query 698878 CAGAAAATCATGGGAAATATATTGTTTA---TGATCCAAAACCTCTTAAAGGAGATTGGA 698934 |||| | | ||| | | |||||| ||||||||| ||| || ||||||||||| Sbjct 460 CAGAGATTGCTGG---AGTTGTTGTTTCATTTGATCCAAAGCCTATTCCAGGAGATTGGA 404 Query 698935 ATGGATCAGGATGTCATACTAATTTCAGTACAGAATCAATGAGA 698978 ||||| | ||| |||| | || || || || ||||||||||| Sbjct 403 ATGGAGCTGGAGCTCATGCAAACTTTAGCACCAAATCAATGAGA 360 >seq1544 Length=892 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| || ||| || | || || ||||| ||||| Sbjct 614 ACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGT 673 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || || ||||| || || || |||||||| || ||||| |||||||| Sbjct 674 ACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCC 733 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| ||||| || || || |||| | | | || | Sbjct 734 TTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGA-CCTCGA 792 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| || || |||||||| ||||| Sbjct 793 GAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTG 832 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 ||||| || ||||| ||||| || || || | ||| |||||||| ||||| || Sbjct 162 AGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTT 221 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||||| || ||||| || ||||| || | | || ||||| |||||||| || ||| Sbjct 222 CCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCC 281 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGT 480733 || || || ||||| || || ||||| || || | | | | | | | ||||| Sbjct 282 TTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACCT-CGAGGGT 340 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||||||| |||||||| || || || || Sbjct 341 AATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTG 376 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | ||||| ||||| || ||| || | || || ||||| | ||| Sbjct 386 ACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGT 445 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || || |||||||| ||||| || | | || ||||| ||||| ||||| Sbjct 446 CCTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCC 505 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || || ||||| || || || || ||||||| | | || || | Sbjct 506 TTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAA-CCTCGA 564 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || ||||| |||||||| |||||||| || || || Sbjct 565 GGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTG 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268112112451472