Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq456 116 5e-21
>seq456
Length=562
Score = 116 bits (128), Expect = 5e-21
Identities = 170/239 (71%), Gaps = 1/239 (0%)
Strand=Plus/Minus
Query 32609 CAGTAGAGTTTCTCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACA 32668
|||| ||||| ||||| | | ||| ||||| | ||||||||| | ||||| ||||||
Sbjct 509 CAGT-GAGTTCTTCTTCCTTGTGAGTCTCAATAACAACATCAGACTTAGGATAAGCAACA 451
Query 32669 CAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGG 32728
||||| || ||||| || ||||||| || |||||||| | ||| || |||| |||
Sbjct 450 CAAGTAAGAACAAAACCACCTTCAATCTGGTCATCATCAAGGAAAGAACCATCAGATTGA 391
Query 32729 TCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAG 32788
|| ||| ||| |||| ||||| ||||| || ||||| | ||| || | || |||
Sbjct 390 TCAACTTCACCCCCAACAACTTTACCAGCACATGAAGAACAAGAACCAGCTCTGCATGAG 331
Query 32789 TAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGATCATCAGCACA 32847
|| | ||||| ||| |||| || || ||||| ||||| |||||| | |||
Sbjct 330 TAAGGGAGATCAATTCCAACTTCTTCAGCATGGTCAAGAATGTAAACATCATCTGGACA 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665481389584480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |