Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq211 149 7e-31
seq1201 147 3e-30
>seq211
Length=153984
Score = 149 bits (164), Expect = 7e-31
Identities = 970/1526 (64%), Gaps = 43/1526 (3%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGCATCCTCATG 75205
||||| || | || ||| | |||| |||||||| ||| ||||||| |
Sbjct 109838 TACTTCGGCTTTAAGACCTTGGAGAGATCCTATCTTCTCAAGCTTGATGGCAAGATTGCC 109779
Query 75206 GAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGAT 75265
|| | |||||| ||||| ||||||| || || | |||||| || || || ||||
Sbjct 109778 GAGAGACCACAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAG 109719
Query 75266 TCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATG-TTCATTCACGCAACACCA 75322
||| | ||||||||| || |||||| |||| || |||| ||||| | ||
Sbjct 109718 CGCGTCATTGAGACATACAACTTGATGTCGAGCAAG---TGCTTCACCCACGCTTCGCCC 109662
Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382
|| | ||||| || ||||| || | ||| |||| ||||| || ||| ||
Sbjct 109661 ACATTGTTCAACGCCGGTACTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATG 109602
Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442
||||| ||||| || | || ||||| | ||||| | | || || || |||||
Sbjct 109601 AAGGAAGACTCTATTGAGGGCATCTACGACACTCTGAAGACCTGCGCCATGATATCAAAA 109542
Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCG 75501
||| || || ||||| | | |||| | | |||| | ||| || |||
Sbjct 109541 ATGGCCGGCGGCATTGGTCTAAATGTCCACCGCATCCGTGCCACTGG--CTCCTACATCG 109484
Query 75502 GGGG-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 75560
|| || ||||| || | ||| ||| || ||||| ||||| || ||| ||| |
Sbjct 109483 CCGGCACCAATGGCACCTCCAACGGTGTTACCCCTATGCTCCGCGTCTTCAACAACACCG 109424
Query 75561 CGCGCTATGTAAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAA 75616
| |||||||| | || | | ||| | || || || | || ||||| | ||
Sbjct 109423 CCCGCTATGTCGACCAGG-GTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAG 109365
Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676
|| ||||||||||| || | ||||| | || | || ||||| || | || |||
Sbjct 109364 CCCTGGCATGCCGACGTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAG 109305
Query 75677 GCTCGGTGTA-GAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCGG 75733
| || ||| | || || |||| || ||| ||||| || || || |||||||||||
Sbjct 109304 G-TCCGTGCCCGTGACCT--TTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGA 109248
Query 75734 GTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC 75793
|| ||| || ||| | ||| | || | ||||| || || || ||||| |||||
Sbjct 109247 GTGGAGAAGAACGGTGACTGGACACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGAC 109188
Query 75794 -GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA-GAGGAGGGTAGAGCCA 75851
|| ||| ||||| || |||||| | ||| ||||| || | | ||| || | |
Sbjct 109187 TGCTATGGC-GAGGAATTCGAAGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCG 109129
Query 75852 ATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910
| ||| | ||| | || | | ||| | || |||||| | | ||||| |||||
Sbjct 109128 AAA-GACCATGAAGGCC-CAGAAGCTCTGGTATGCCATTCTCGAGGCCCAGACTGAGACC 109071
Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970
|| | || | ||||| ||||||||| | ||| ||||| ||||| |||||| |
Sbjct 109070 GGCAACCCTTTCATGCTCTACAAGGATCATGCCAACCGCAAGAGCAACCAGAAGAATCTC 109011
Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030
|| || || ||||| || |||||||||||||| | |||||| | | || |||
Sbjct 109010 GGCACCATTCGAAGCTCCAACCTTTGCACGGAAATCATTGAGTACTCGGCCCCTGACGAG 108951
Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGA-AGAGACTCG 76089
|| || ||||| ||||| || | || || || | || || | || ||| |
Sbjct 108950 GTCGCCGTCTGCAACTTGGCGTCCCTTGCTCTCCCTTCTTTCGTGAACTACAGCGACG-G 108892
Query 76090 CACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCG 76149
| | ||| | | || || || || |||| || ||||| || || || |
Sbjct 108891 AATCTATGACTTCCAGAAGCTACACGATGTCACCCAGGTTGTTGTTCGCAACCTGAATAG 108832
Query 76150 AGTCATTGACAGAAATTTTTATCCCGTT---GAGACTGCGCGAAAGTCTAATATGCGACA 76206
|||| ||| || |||||||| ||| || ||| | || || ||||| ||
Sbjct 108831 GATCATCGACGTCAACCACTATCCCGTCCCGGAGGCT-CGCAACAGC--AACATGCGCCA 108775
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTT-TGTGCCGCTACG 76265
| || ||||| | ||||| || ||||| || |||| ||| | | ||| || |
Sbjct 108774 TCGGCCCATTGGCCTCGGTGTCCAGGGTCTTGCTGATGCATTCTTGGCTTTGCGACTGC- 108716
Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325
| || || || ||| || || |||| ||||| || ||||| || ||||
Sbjct 108715 CGTTCGAGTCGCCTGAGGCTCGTGAACTGAACAAGAAGATCTTCGAGACCATCTACCACG 108656
Query 76326 CATCCCTGGAGGCGAGTT-GTGAAT-TGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383
| | || | || ||| | | || | | | || ||||| | | | |||
Sbjct 108655 CTGCTCTCAC--CATGTCAGTGCAGCTAGCCAAGGAGGAGGGCACCTATTCGTCTTATGA 108598
Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT 76443
|| || || | || || || || ||||| | ||| ||||||| || | || || |
Sbjct 108597 AGGCTCCCCAGTCTCACAGGGCGTCCTTCAATATGACATGTGGGGAG-TCAAGCCCTCCG 108539
Query 76444 -CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 76502
| || ||||||||| ||||||||||| |||||| || | ||| | ||||||||
Sbjct 108538 ACCTCTGGGACTGGGATTCTCTCAAGGAACAGATCAAGCAGCATGGTGTGCGTAACAGCT 108479
Query 76503 TTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCT 76562
| | | || || |||||||| ||| || | || || |||| || || |||||||
Sbjct 108478 TGCTCGTCGCCCCCATGCCAACCGCCAGTACTTCCCAGATTCTGGGCAACAACGAATGCT 108419
Query 76563 TTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTG 76622
|||| || ||||| | |||||||||| | | | | | || ||||||||| |||
Sbjct 108418 TTGAGCCTTACACCTCCAACATCTACCAGCGTCGCGTCTTGGCTGGTGAGTTTCAGGTTG 108359
Query 76623 TCAACAAGCACCTCGTCAATGACCTC 76648
||||| ||| |||| ||||||
Sbjct 108358 TCAACCCTTGGCTCCTCAAGGACCTC 108333
>seq1201
Length=295393
Score = 147 bits (162), Expect = 3e-30
Identities = 354/527 (67%), Gaps = 19/527 (4%)
Strand=Plus/Minus
Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGA---AT 64770
|||||||| || || ||||||||||||| ||||| |||||||||| | | || |
Sbjct 157019 TGGACTGCTGAGGAGATTGATTTGTCCAAGGATCTCCACGACTGGAACAACAAGATCAAC 156960
Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830
|| |||| ||| | ||||| |||| || || ||||| || | ||||| || ||
Sbjct 156959 GATGATGAGAAGTACTTCATCTCTCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATC 156900
Query 64831 GTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCA 64890
|| |||||| | | | ||| | | ||||| ||| | ||| |||||||
Sbjct 156899 GTCAATGAGAACCTGGTTGAGCGTTTCTCTGGCGAAGTCCAGGTCCCCGAGGCGCGCTGC 156840
Query 64891 TTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGAT 64949
||||||| | || | ||| ||| | | |||| ||| || || || | ||
Sbjct 156839 TTCTACGGCT-TCCAGATCATGATGGAGAACATTCACTCCGAGACTTACTCCCTTCTCAT 156781
Query 64950 TGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTAT---TTGAA-GCCATCCAAA 65005
|||| ||||||||||| ||| || | | ||| || || |||||| | |
Sbjct 156780 CGACACCTACATTAAGGAGC---CTGCCCAGC-GTACCTATCTCTTCAACGCCATCGACA 156725
Query 65006 CTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGT 65062
| | || || || |||||||| | ||||| || ||| | ||||||||||
Sbjct 156724 CCATCCCCTGCATCCGTAAGAAGGCTGACTGGGCCTTGCGCTGGATCACGGACACAAAGT 156665
Query 65063 CTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCG 65122
| | |||||||| ||||||| |||| ||||| || ||||| ||||||||| ||
Sbjct 156664 C---CACCTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCG 156608
Query 65123 GGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCT 65182
| | ||| | | || | ||| | |||||||| ||||||||||| || ||| |||||
Sbjct 156607 GTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTCT 156548
Query 65183 CAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
| || || || || ||||| ||||||||||||||| || ||||||
Sbjct 156547 CCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCC 156501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596557937064320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |