Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq632 127 4e-24
seq428 96.9 7e-15
>seq632
Length=500
Score = 127 bits (140), Expect = 4e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||||| | || | ||| | |||| ||| || ||| || || || ||
Sbjct 250 ACCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 191
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
||||||| |||| ||||| ||||||||||||||||| ||||||||||| ||||| ||
Sbjct 190 CAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 131
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
||||||||||| || || || || ||| ||||| ||||| ||| | || ||
Sbjct 130 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAAC 71
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| ||||| || ||||| || || | || || | || ||||||||
Sbjct 70 CTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23
>seq428
Length=571
Score = 96.9 bits (106), Expect = 7e-15
Identities = 168/242 (69%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358
||| ||| || ||||| | ||| | | || | ||| | ||||| || || |||||
Sbjct 328 GTTCAATGATTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATAT 387
Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418
| ||||| | || || ||| |||| || | || |||||||| || || || | ||| |
Sbjct 388 TGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCT 447
Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478
|||| || || || |||||||| ||||| || || | || ||||| || | || |
Sbjct 448 GATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTC-G 506
Query 192479 ACGAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
| | || || || || || |||||||| || |||| ||||| | || |||||||||
Sbjct 507 CTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATT 566
Query 192538 TT 192539
||
Sbjct 567 TT 568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984460272251400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |