Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq632 127 4e-24 seq428 96.9 7e-15 >seq632 Length=500 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | ||| | |||| ||| || ||| || || || || Sbjct 250 ACCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 191 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||||| |||| ||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct 190 CAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 131 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || || || ||| ||||| ||||| ||| | || || Sbjct 130 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAAC 71 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || || | || || | || |||||||| Sbjct 70 CTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 >seq428 Length=571 Score = 96.9 bits (106), Expect = 7e-15 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| || ||||| | ||| | | || | ||| | ||||| || || ||||| Sbjct 328 GTTCAATGATTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATAT 387 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | ||||| | || || ||| |||| || | || |||||||| || || || | ||| | Sbjct 388 TGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCT 447 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || |||||||| ||||| || || | || ||||| || | || | Sbjct 448 GATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTC-G 506 Query 192479 ACGAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | | || || || || || |||||||| || |||| ||||| | || ||||||||| Sbjct 507 CTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATT 566 Query 192538 TT 192539 || Sbjct 567 TT 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984460272251400