Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq632 116 7e-21 seq428 87.8 3e-12 >seq632 Length=500 Score = 116 bits (128), Expect = 7e-21 Identities = 174/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| | |||||| | || || | || | ||| | |||| ||| || Sbjct 268 CTTCTTACGTTTCTTGGCACCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTT 209 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 || || || || || || | || | || ||||| |||||||||||||| || || Sbjct 208 CTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAA 149 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 ||||||||||||||| || ||||||||||| || || || || ||| ||||| ||| Sbjct 148 TCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTAT 89 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 |||||| | || || || ||||| || ||||| || || | || || | ||| || Sbjct 88 AGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGAT 29 Query 172064 CTGCAT 172069 |||||| Sbjct 28 CTGCAT 23 >seq428 Length=571 Score = 87.8 bits (96), Expect = 3e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || || ||||| | ||| | | || | ||| | ||||| || || ||||| ||| Sbjct 333 ATGATTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAA 392 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || | || | ||| | || || | || |||||||| ||||| || | ||| || || Sbjct 393 TCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCC 452 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || |||||||| ||||| || || | || ||||| || || || | | | Sbjct 453 GGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTC-GCTGCT 511 Query 172017 -TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || || |||||||| || |||| ||||| | ||| ||||||||||| Sbjct 512 CTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905118304591200