Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq632 116 7e-21
seq428 87.8 3e-12
>seq632
Length=500
Score = 116 bits (128), Expect = 7e-21
Identities = 174/246 (71%), Gaps = 1/246 (0%)
Strand=Plus/Minus
Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883
||| ||| ||||| | |||||| | || || | || | ||| | |||| ||| ||
Sbjct 268 CTTCTTACGTTTCTTGGCACCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTT 209
Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943
|| || || || || || | || | || ||||| |||||||||||||| || ||
Sbjct 208 CTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAA 149
Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003
||||||||||||||| || ||||||||||| || || || || ||| ||||| |||
Sbjct 148 TCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTAT 89
Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063
|||||| | || || || ||||| || ||||| || || | || || | ||| ||
Sbjct 88 AGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGAT 29
Query 172064 CTGCAT 172069
||||||
Sbjct 28 CTGCAT 23
>seq428
Length=571
Score = 87.8 bits (96), Expect = 3e-12
Identities = 163/237 (69%), Gaps = 2/237 (1%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| || ||||| | ||| | | || | ||| | ||||| || || ||||| |||
Sbjct 333 ATGATTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAA 392
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| | || | ||| | || || | || |||||||| ||||| || | ||| || ||
Sbjct 393 TCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCC 452
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
|| || || |||||||| ||||| || || | || ||||| || || || | | |
Sbjct 453 GGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTC-GCTGCT 511
Query 172017 -TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
|| || || || || |||||||| || |||| ||||| | ||| |||||||||||
Sbjct 512 CTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905118304591200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |