Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq968 141 3e-28
seq211 114 4e-20
seq1001 98.7 3e-15
seq1201 93.3 1e-13
seq1079 93.3 1e-13
>seq968
Length=375018
Score = 141 bits (156), Expect = 3e-28
Identities = 190/262 (73%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || || || ||| | || || ||||| |||||||| ||
Sbjct 163144 CTTGACCAGACGACGCTGGATGTATCCGGTTTCGGCAGTCTTGACAGCGGTATCAATCAG 163203
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701
||| | | |||| |||| || |||||||| | ||| || ||| || || | |
Sbjct 163204 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAACTCGCTTGG-CGTCAGGCCACGGAGGT 163262
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
||||| |||| ||||||||||| |||||||| || | |||| |||||| || || ||||
Sbjct 163263 AGGAGTTCTCGACGAAACCACGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGGGGCA 163322
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| |||| || || | ||| | || |||||||| || || || |||||||||| | |
Sbjct 163323 GCGTCCGGTACTTGAACCCGAAAGGAATACGCTTACCCTCGACAATCTGCTGTCCGACGA 163382
Query 302822 ACGAAATCATCTGCGAAATATT 302843
|| | ||||||| || |||||
Sbjct 163383 GCGCAGTCATCTGGGAGATATT 163404
Score = 84.2 bits (92), Expect = 6e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || ||||| |||| ||||| |||||| | ||||||||
Sbjct 162353 AGAATTTCCTTGAGACGAGGGACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 162409
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| || ||||| || | || || | |||||||||||| || || |||||
Sbjct 162410 AAATGGAAGGTGTTCAGGGTCATCTGCGTGGCAGGCTCACCAATAGACTGCGCAGCAATG 162469
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||||||||| || || ||
Sbjct 162470 ACACCAACCATCTCACCGGG 162489
>seq211
Length=153984
Score = 114 bits (126), Expect = 4e-20
Identities = 466/730 (64%), Gaps = 11/730 (2%)
Strand=Plus/Plus
Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707
||| ||||| || || |||||||| | |||||||||||| || | ||| |
Sbjct 108984 GCAAAGGTTGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG 109043
Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767
||||||||| || ||| | ||| | || ||||| |||| || || ||||| |||
Sbjct 109044 ATCCTTGTAGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCA 109103
Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCT-GCCTTCCGACTCATATTTCATATACA 155826
||| | |||| || || ||| | | || |||||| ||| || ||| ||||
Sbjct 109104 GAGCTTCTGGGCCTTCATGGTCTT-TCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACA 109162
Query 155827 GCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886
| | | | ||||| || || || || || || ||||||| | ||| || | ||
Sbjct 109163 AGGCTTCGAATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCA 109222
Query 155887 GCGACCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943
| | ||| | || || | | | |||| ||| || | |||| ||||| |
Sbjct 109223 GTGTCCAGTCACCGTTCTTCTCCACT---CGCTTCATGAAGAGATCAGGGATCCAAAGGG 109279
Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003
| ||||||||| | || |||||| | |||||| ||||| || || || || |
Sbjct 109280 CGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAA 109339
Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG- 156062
| || | || | ||| ||||| || || || ||||| ||| | ||||
Sbjct 109340 ACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGT 109399
Query 156063 --CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120
|||||||| || ||||| || || || || |||||||| | |||||||| ||| ||
Sbjct 109400 TGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACAC 109459
Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180
| ||||| ||||||||||| ||| || | || |||| | || | || | ||
Sbjct 109460 CGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACAT 109519
Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240
||| ||||| || || | | ||| || || ||||| ||| | ||| | | | |
Sbjct 109520 TTAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGA 109579
Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300
| || |||||||| || || | ||| | ||| |||| || | || | | |
Sbjct 109580 TGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGG 109639
Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360
| || || |||||||| | ||| || | || || | || |||| | ||||| | |
Sbjct 109640 GAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTCGACATCAAGT 109699
Query 156361 CGTATGTCTC 156370
|||||||||
Sbjct 109700 TGTATGTCTC 109709
>seq1001
Length=360645
Score = 98.7 bits (108), Expect = 3e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 251480 GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCAT 251539
|||| ||||||| | |||| ||||||||||||||| || || | |||||||||||| |
Sbjct 216071 GAGAAGCACCGTACGCGATCAGACAATCACGCTCCATCTCTCCCAGACGAAGACCACCGT 216012
Query 251540 CGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGC 251599
| || | | ||| || | |||||| |||||||| | | | ||||| || ||
Sbjct 216011 CTCGGGAACGACCTTCTGTAGGCTGGCGAGTGAGGATGGCTCTGGGACCACGCGAACGCG 215952
Query 251600 TATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659
|| ||| || | ||||| ||||| |||||||||||| | ||||||| |||| |
Sbjct 215951 AGTGCATCTTGTCCTGCACCATGTGCTTCAGACGCTGGTAGTAGATGGGACCGTTGAAAA 215892
Query 251660 TG 251661
||
Sbjct 215891 TG 215890
>seq1201
Length=295393
Score = 93.3 bits (102), Expect = 1e-13
Identities = 244/370 (66%), Gaps = 2/370 (1%)
Strand=Plus/Minus
Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348
|| ||||| || | |||| || || ||| || || | ||||| |||||| ||
Sbjct 156869 GGCGAAGTCCAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAAC 156810
Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408
|| || || || || || ||| || || || ||||| || || | | ||||
Sbjct 156809 ATTCACTCCGAGACTTACTCCCTTCTCATCGACACCTACATTAAGGAGCCTGCCCAGCGT 156750
Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468
| | || ||||||||||| | | || || || ||||| ||||||||||
Sbjct 156749 ACCTATCTCTTCAACGCCATCGACACCATCCCCTGCATCCGTAAGAAGGCTGACTGGGCC 156690
Query 133469 ATTAAATGGATCCAGGACA-AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527
| |||||| ||||| | || | | || || || |||||||| ||||| |
Sbjct 156689 TTGCGCTGGATCACGGACACAAAGT-CCACCTTCGCCCAGCGCCTCGTTGCCTTTGCCGC 156631
Query 133528 AGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGG 133587
|| |||||||| || ||||| ||||| ||| ||| || || ||||| || ||||||||
Sbjct 156630 CGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGG 156571
Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647
| | | || || || || || ||||| || || || | || |||| || |||||
Sbjct 156570 TCTCATGCCCGGTCTAACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACAC 156511
Query 133648 CGAATTTGCC 133657
||| ||||||
Sbjct 156510 CGACTTTGCC 156501
>seq1079
Length=328518
Score = 93.3 bits (102), Expect = 1e-13
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||||| |||||| |||||||||||||| || ||||| || ||||||||||| |||
Sbjct 13944 GCACCGTGTGCAATCATGCAATCACGCTCCATCTCGCCGAACCGCAGACCACCATCACGA 14003
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | ||| ||| | ||||| | |||
Sbjct 14004 GCACGACCTTCGACTGGCTGTCTAGT 14029
Score = 91.5 bits (100), Expect = 4e-13
Identities = 129/179 (72%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869
|||| |||| || || ||| ||| || || ||||||||||| ||| ||||| |
Sbjct 14269 ACACCTTGCTTAGCAGACACTCGATCAAATGAGCAATAGTCATACGGGAGGGGATAGCGT 14328
Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929
|||| ||||||||||||||||| | | || ||||| ||||||||||| |||| ||
Sbjct 14329 GGGGGTTGATGATGATGTCGGGGGTGATGCCCTCAGCGGTGAAGGGCATGTCCTCTT-GG 14387
Query 251930 CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| ||| || || || || ||||| || || || || || ||||| ||||||||
Sbjct 14388 CGATATGTGACACCGATCGTACCCTTCTGACCATGGCGGGACGCAAACTTGTCACCAAT 14446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471788106615068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |