Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq968 141 3e-28 seq211 114 4e-20 seq1001 98.7 3e-15 seq1201 93.3 1e-13 seq1079 93.3 1e-13 >seq968 Length=375018 Score = 141 bits (156), Expect = 3e-28 Identities = 190/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || || || ||| | || || ||||| |||||||| || Sbjct 163144 CTTGACCAGACGACGCTGGATGTATCCGGTTTCGGCAGTCTTGACAGCGGTATCAATCAG 163203 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| | | |||| |||| || |||||||| | ||| || ||| || || | | Sbjct 163204 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAACTCGCTTGG-CGTCAGGCCACGGAGGT 163262 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 ||||| |||| ||||||||||| |||||||| || | |||| |||||| || || |||| Sbjct 163263 AGGAGTTCTCGACGAAACCACGAGCCTCGGGAGAGTAGTCGTCCTTGGTGAAATGGGGCA 163322 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | |||| || || | ||| | || |||||||| || || || |||||||||| | | Sbjct 163323 GCGTCCGGTACTTGAACCCGAAAGGAATACGCTTACCCTCGACAATCTGCTGTCCGACGA 163382 Query 302822 ACGAAATCATCTGCGAAATATT 302843 || | ||||||| || ||||| Sbjct 163383 GCGCAGTCATCTGGGAGATATT 163404 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| |||| ||||| |||||| | |||||||| Sbjct 162353 AGAATTTCCTTGAGACGAGGGACACCCAGGGTGACGTT---CTTGGAAGACACACCAGCG 162409 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | || || | |||||||||||| || || ||||| Sbjct 162410 AAATGGAAGGTGTTCAGGGTCATCTGCGTGGCAGGCTCACCAATAGACTGCGCAGCAATG 162469 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||||||||| || || || Sbjct 162470 ACACCAACCATCTCACCGGG 162489 >seq211 Length=153984 Score = 114 bits (126), Expect = 4e-20 Identities = 466/730 (64%), Gaps = 11/730 (2%) Strand=Plus/Plus Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 ||| ||||| || || |||||||| | |||||||||||| || | ||| | Sbjct 108984 GCAAAGGTTGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG 109043 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 ||||||||| || ||| | ||| | || ||||| |||| || || ||||| ||| Sbjct 109044 ATCCTTGTAGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCA 109103 Query 155768 GAGGTCACGGGCATTAATTTGCTTGTTGTATCT-GCCTTCCGACTCATATTTCATATACA 155826 ||| | |||| || || ||| | | || |||||| ||| || ||| |||| Sbjct 109104 GAGCTTCTGGGCCTTCATGGTCTT-TCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACA 109162 Query 155827 GCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 | | | | ||||| || || || || || || ||||||| | ||| || | || Sbjct 109163 AGGCTTCGAATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCA 109222 Query 155887 GCGACCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 | | ||| | || || | | | |||| ||| || | |||| ||||| | Sbjct 109223 GTGTCCAGTCACCGTTCTTCTCCACT---CGCTTCATGAAGAGATCAGGGATCCAAAGGG 109279 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 | ||||||||| | || |||||| | |||||| ||||| || || || || | Sbjct 109280 CGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAA 109339 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG- 156062 | || | || | ||| ||||| || || || ||||| ||| | |||| Sbjct 109340 ACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGT 109399 Query 156063 --CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 |||||||| || ||||| || || || || |||||||| | |||||||| ||| || Sbjct 109400 TGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACAC 109459 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | ||||| ||||||||||| ||| || | || |||| | || | || | || Sbjct 109460 CGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACAT 109519 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 ||| ||||| || || | | ||| || || ||||| ||| | ||| | | | | Sbjct 109520 TTAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGA 109579 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 | || |||||||| || || | ||| | ||| |||| || | || | | | Sbjct 109580 TGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGG 109639 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360 | || || |||||||| | ||| || | || || | || |||| | ||||| | | Sbjct 109640 GAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTCGACATCAAGT 109699 Query 156361 CGTATGTCTC 156370 ||||||||| Sbjct 109700 TGTATGTCTC 109709 >seq1001 Length=360645 Score = 98.7 bits (108), Expect = 3e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 251480 GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCAT 251539 |||| ||||||| | |||| ||||||||||||||| || || | |||||||||||| | Sbjct 216071 GAGAAGCACCGTACGCGATCAGACAATCACGCTCCATCTCTCCCAGACGAAGACCACCGT 216012 Query 251540 CGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGC 251599 | || | | ||| || | |||||| |||||||| | | | ||||| || || Sbjct 216011 CTCGGGAACGACCTTCTGTAGGCTGGCGAGTGAGGATGGCTCTGGGACCACGCGAACGCG 215952 Query 251600 TATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 || ||| || | ||||| ||||| |||||||||||| | ||||||| |||| | Sbjct 215951 AGTGCATCTTGTCCTGCACCATGTGCTTCAGACGCTGGTAGTAGATGGGACCGTTGAAAA 215892 Query 251660 TG 251661 || Sbjct 215891 TG 215890 >seq1201 Length=295393 Score = 93.3 bits (102), Expect = 1e-13 Identities = 244/370 (66%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 || ||||| || | |||| || || ||| || || | ||||| |||||| || Sbjct 156869 GGCGAAGTCCAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAAC 156810 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 || || || || || || ||| || || || ||||| || || | | |||| Sbjct 156809 ATTCACTCCGAGACTTACTCCCTTCTCATCGACACCTACATTAAGGAGCCTGCCCAGCGT 156750 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 | | || ||||||||||| | | || || || ||||| |||||||||| Sbjct 156749 ACCTATCTCTTCAACGCCATCGACACCATCCCCTGCATCCGTAAGAAGGCTGACTGGGCC 156690 Query 133469 ATTAAATGGATCCAGGACA-AGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGT 133527 | |||||| ||||| | || | | || || || |||||||| ||||| | Sbjct 156689 TTGCGCTGGATCACGGACACAAAGT-CCACCTTCGCCCAGCGCCTCGTTGCCTTTGCCGC 156631 Query 133528 AGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGG 133587 || |||||||| || ||||| ||||| ||| ||| || || ||||| || |||||||| Sbjct 156630 CGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGG 156571 Query 133588 TATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACAC 133647 | | | || || || || || ||||| || || || | || |||| || ||||| Sbjct 156570 TCTCATGCCCGGTCTAACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACAC 156511 Query 133648 CGAATTTGCC 133657 ||| |||||| Sbjct 156510 CGACTTTGCC 156501 >seq1079 Length=328518 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||||| |||||| |||||||||||||| || ||||| || ||||||||||| ||| Sbjct 13944 GCACCGTGTGCAATCATGCAATCACGCTCCATCTCGCCGAACCGCAGACCACCATCACGA 14003 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGT 251570 || | ||| ||| | ||||| | ||| Sbjct 14004 GCACGACCTTCGACTGGCTGTCTAGT 14029 Score = 91.5 bits (100), Expect = 4e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 |||| |||| || || ||| ||| || || ||||||||||| ||| ||||| | Sbjct 14269 ACACCTTGCTTAGCAGACACTCGATCAAATGAGCAATAGTCATACGGGAGGGGATAGCGT 14328 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929 |||| ||||||||||||||||| | | || ||||| ||||||||||| |||| || Sbjct 14329 GGGGGTTGATGATGATGTCGGGGGTGATGCCCTCAGCGGTGAAGGGCATGTCCTCTT-GG 14387 Query 251930 CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | ||| || || || || ||||| || || || || || ||||| |||||||| Sbjct 14388 CGATATGTGACACCGATCGTACCCTTCTGACCATGGCGGGACGCAAACTTGTCACCAAT 14446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471788106615068