Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1234 203 4e-46
seq211 163 3e-34
seq1510 143 3e-28
seq1201 136 5e-26
seq1046 114 2e-19
seq746 87.8 2e-11
>seq1234
Length=712154
Score = 203 bits (224), Expect = 4e-46
Identities = 278/389 (71%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| |||| |||||||||||||||| || || |
Sbjct 56629 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGACGGCGTGCCGCCCGGCTTGACC 56688
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||| |||| | ||||| ||| || | || ||||| || |||||| |||| ||
Sbjct 56689 CTCACCGAGTCCGATGTTCAGCCCCAGCTGAACCGCCGCCGCCCCGGCCAGAGCGCCCTC 56748
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
|||| ||||| |||||| || ||||| |||||||| ||||| ||| |||| ||
Sbjct 56749 ACCACCCCGCGAAACGAGAAGGACCGCGTTGTCATCCAGAGCGGCACCGAGTTCGGCGTC 56808
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337
|| | ||| | || ||||| | | || ||| |||||||| ||| ||||
Sbjct 56809 ACTTTGGGCACCCCGCTCGGCATGATCGTCCAGAACGAGGACCAGCGTCCCAAAGACTAC 56868
Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| ||| |||| || | || || || || || ||||||| |||||| | |
Sbjct 56869 GGCAACTCCACCATGGACATGTACCCCCGCCCGTCCCATGCCGACTGGACCTACCTCGAG 56928
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
|||||||| ||||||| || || || ||||| || || |||||||||||| ||
Sbjct 56929 AAGTACGGTGTCAAGGCCAGCTCCGGTGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 56988
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
||||||||||||||||| |||||||||||
Sbjct 56989 CGCGTCGCCGCCGGCGCCGTCGCCGAGAA 57017
Score = 141 bits (156), Expect = 1e-27
Identities = 134/169 (79%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 19035 AAGCGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA 19094
|||||| |||||||||||||||||||| || || ||||| |||||| |||
Sbjct 57244 AAGCGC---GAGGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAACCCGCCCATC 57300
Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154
|||||||||||||| ||||| |||||| ||||||||| ||| |||||||||||| ||
Sbjct 57301 GGCCTCGGCGAGCCCTGCTTCGACAAGCTCGAGGCCGAGCTGGCCCACGCCATGATGAGC 57360
Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202
||||| ||||||||||| |||||||| || ||| || |||| ||||
Sbjct 57361 ATCCCCGCCACCAAGGGCTTCGAGATCGGTTCCGGCTTCGGCGGCTGCG 57409
>seq211
Length=153984
Score = 163 bits (180), Expect = 3e-34
Identities = 270/388 (70%), Gaps = 15/388 (4%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||| ||||| || |||| ||| |||||||||||||| || | ||||||||
Sbjct 109407 CTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGA 109466
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||| |||||||| || | ||||| ||| | ||| || | ||| | | ||
Sbjct 109467 GGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACATTTAGACC 109526
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||||||||| || || || | ||||| || || |||||||||||||||||
Sbjct 109527 AATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTC 109586
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||||||||| ||||| || | || | || ||
Sbjct 109587 AATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACC 109646
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| | ||||||| || |||||| ||| | |||||| || ||| ||
Sbjct 109647 GGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTCGACATCAAGTTGTATGT 109706
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| | |||||| | | ||||||| || ||| || ||| | ||| ||
Sbjct 109707 CTCAATGACGCGCTCAA---CATCGTC-------GC---CCC--AGATGCCAACGGCAAC 109751
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCG 1630452
|||||||| ||||| ||| || | ||||
Sbjct 109752 GCGCATGATCATGTGCTGTGGTCTCTCG 109779
Score = 102 bits (112), Expect = 1e-15
Identities = 165/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 1628369 CCGCGCCGTAGCACTCGTGCAGG--CCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTC 1628426
|| |||| ||||| ||| ||| | |||||| | ||| ||||| | || | ||||||
Sbjct 109175 CCTCGCCATAGCAGTCG-GCAAGACCCGGGCAC-TCGTTGGGACACATCAGTGTCCAGTC 109232
Query 1628427 GCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTC 1628486
|| || || | || ||| ||||| ||| |||| || ||| || |||||
Sbjct 109233 ACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTC 109292
Query 1628487 GCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTC 1628546
|| || ||| ||||||||||||||||||||| |||||| | | |||| | |||
Sbjct 109293 ACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTC 109352
Query 1628547 GGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
||| ||||| ||||| |||||| ||||||||| || ||||||| ||| ||
Sbjct 109353 GGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACC 109406
>seq1510
Length=208424
Score = 143 bits (158), Expect = 3e-28
Identities = 97/109 (89%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| |||||||||||||||||||||| || || || |||| |||||| | || ||||||
Sbjct 165388 GCCTCCAACTACCTCGACATCAAGCCCCTCCTTGACGTTGGCTGCAAGACCGTCGCCAAC 165329
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 165328 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 165280
>seq1201
Length=295393
Score = 136 bits (150), Expect = 5e-26
Identities = 193/267 (72%), Gaps = 11/267 (4%)
Strand=Plus/Plus
Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260
|||||| |||| || ||||||||||| || |||||||||||||| ||||||| | |
Sbjct 156541 TCGTTGGAGAAGGTTAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCG 156600
Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320
||| || ||| |||||||||||||||||||||||| | | ||| |||| ||| |||
Sbjct 156601 AAAGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAG 156660
Query 869321 GTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACC 869377
||| || || ||| ||||||| || |||||||| ||||| || | |
Sbjct 156661 GTG--GA----CTTTGTGTCCGTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATG 156714
Query 869378 GACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATA 869436
| || | |||||||||||| ||||| | ||| | | ||| || ||||| | ||
Sbjct 156715 CAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGTAC-GCTGGGCAGGCTCCTTAATGTA 156773
Query 869437 GGTGTCGATCAGGAGCGAATAGGTCTC 869463
||||||||| || || || || |||||
Sbjct 156774 GGTGTCGATGAGAAGGGAGTAAGTCTC 156800
Score = 131 bits (144), Expect = 2e-24
Identities = 174/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| ||| || |||||||||||||| | || |||||
Sbjct 156205 GCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAGATG 156264
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| || |||||| ||| ||| ||||| | |
Sbjct 156265 TTCTCCATGAAGTCGAAGGGGTTGGCCGATTTGTAGACCTTGTCGTTGCCGAGAGCGACC 156324
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
| ||| || || ||||| ||||||||||| || ||| ||| || ||||||||| | |
Sbjct 156325 AACAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGGTTGGAGTTCATGCCCAGG 156384
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||||| | |||| ||| ||||||| |||||||| ||| || ||||||||
Sbjct 156385 AGGGCGCAAGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGCATCGACGATA 156444
Query 868931 AT 868932
||
Sbjct 156445 AT 156446
>seq1046
Length=332835
Score = 114 bits (126), Expect = 2e-19
Identities = 235/336 (70%), Gaps = 24/336 (7%)
Strand=Plus/Minus
Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCC-ATCTCGCGGTG 1726791
|| |||||||||||||||||||||| || | | ||| |||| | | | |||||||||
Sbjct 247828 CCATCGGTGCCGTTCTTGAAGCCGACGGGGAAGGACAG-GCCGCTGGCGAGCTCGCGGTG 247770
Query 1726792 CACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCC-ACCAGGTCTGCCA--- 1726847
|| ||||||||| || ||||| ||||| | |||||| |||| | | ||| || |
Sbjct 247769 CAGCTGGCTCTCTGTGGTGCGGGCGCCGATGGCGCCG-ACGCTGATGAAGTCGGCGAGGA 247711
Query 1726848 AATAAGGGGCCACCAGA-GGACT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGAC 1726905
| | |||| ||| || | ||| | |||| ||| | |||| || | |||||
Sbjct 247710 ACTGCGGGG-----AGATGGTGTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGA 247659
Query 1726906 GACGAGATCGCGCAACAGGCGGCGC--GACGCCGTCAGGCCGTCGGCCAGGCGGCACGAC 1726963
| ||| ||||| || ||| ||| ||||| || ||| | | | | | |
Sbjct 247658 GGTGAGGTCGCGGAAGAGGGTGCGGCTGACGCG--CAAGCCCTTGTTGATCTTGAAGGTG 247601
Query 1726964 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 1727023
||||| ||| |||||| || ||||||||||| |||||||| ||||| ||||| |||
Sbjct 247600 GAGTCGATGTCCGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCG 247541
Query 1727024 ACATAGGCGCGCATGACCACGCAAAGCGCGTCGCCG 1727059
| |||||||||||||| ||||| || |||||||
Sbjct 247540 AGGTAGGCGCGCATGACGACGCAGAG---GTCGCCG 247508
>seq746
Length=525449
Score = 87.8 bits (96), Expect = 2e-11
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 1572461 TCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTG-GACAACGTGGTCGGCGTCGGTGTG 1572519
|||| || | ||||||||| || | | | | | | ||| || ||||| ||||| |||
Sbjct 256996 TCGACGACGAGCTGGGCGATACG-GTCACCCTCAGCGACCTCGAAGTCGGAGTCGGCGTG 257054
Query 1572520 GTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCGAC 1572579
||||||||| | ||| ||||||||||| ||||| || ||||||||||| ||||||
Sbjct 257055 GTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCCGCGTCGATGACGCCGGCGCCGGT 257114
Query 1572580 GTCGATG 1572586
|||||||
Sbjct 257115 GTCGATG 257121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107010850835788
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