Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1234 203 4e-46 seq211 163 3e-34 seq1510 143 3e-28 seq1201 136 5e-26 seq1046 114 2e-19 seq746 87.8 2e-11 >seq1234 Length=712154 Score = 203 bits (224), Expect = 4e-46 Identities = 278/389 (71%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| |||| |||||||||||||||| || || | Sbjct 56629 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATCGTCGACGGCGTGCCGCCCGGCTTGACC 56688 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||| |||| | ||||| ||| || | || ||||| || |||||| |||| || Sbjct 56689 CTCACCGAGTCCGATGTTCAGCCCCAGCTGAACCGCCGCCGCCCCGGCCAGAGCGCCCTC 56748 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 |||| ||||| |||||| || ||||| |||||||| ||||| ||| |||| || Sbjct 56749 ACCACCCCGCGAAACGAGAAGGACCGCGTTGTCATCCAGAGCGGCACCGAGTTCGGCGTC 56808 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337 || | ||| | || ||||| | | || ||| |||||||| ||| |||| Sbjct 56809 ACTTTGGGCACCCCGCTCGGCATGATCGTCCAGAACGAGGACCAGCGTCCCAAAGACTAC 56868 Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | ||| |||| || | || || || || || ||||||| |||||| | | Sbjct 56869 GGCAACTCCACCATGGACATGTACCCCCGCCCGTCCCATGCCGACTGGACCTACCTCGAG 56928 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 |||||||| ||||||| || || || ||||| || || |||||||||||| || Sbjct 56929 AAGTACGGTGTCAAGGCCAGCTCCGGTGGTGGCCGCTCCTCCGCCCGCGAGACCATCGCC 56988 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 ||||||||||||||||| ||||||||||| Sbjct 56989 CGCGTCGCCGCCGGCGCCGTCGCCGAGAA 57017 Score = 141 bits (156), Expect = 1e-27 Identities = 134/169 (79%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 19035 AAGCGCCAAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCA 19094 |||||| |||||||||||||||||||| || || ||||| |||||| ||| Sbjct 57244 AAGCGC---GAGGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAACCCGCCCATC 57300 Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 |||||||||||||| ||||| |||||| ||||||||| ||| |||||||||||| || Sbjct 57301 GGCCTCGGCGAGCCCTGCTTCGACAAGCTCGAGGCCGAGCTGGCCCACGCCATGATGAGC 57360 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 ||||| ||||||||||| |||||||| || ||| || |||| |||| Sbjct 57361 ATCCCCGCCACCAAGGGCTTCGAGATCGGTTCCGGCTTCGGCGGCTGCG 57409 >seq211 Length=153984 Score = 163 bits (180), Expect = 3e-34 Identities = 270/388 (70%), Gaps = 15/388 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| ||||| || |||| ||| |||||||||||||| || | |||||||| Sbjct 109407 CTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGA 109466 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||| |||||||| || | ||||| ||| | ||| || | ||| | | || Sbjct 109467 GGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACATTTAGACC 109526 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||||||||| || || || | ||||| || || ||||||||||||||||| Sbjct 109527 AATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTC 109586 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||||||||| ||||| || | || | || || Sbjct 109587 AATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACC 109646 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| | ||||||| || |||||| ||| | |||||| || ||| || Sbjct 109647 GGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTCGACATCAAGTTGTATGT 109706 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | |||||| | | ||||||| || ||| || ||| | ||| || Sbjct 109707 CTCAATGACGCGCTCAA---CATCGTC-------GC---CCC--AGATGCCAACGGCAAC 109751 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCG 1630452 |||||||| ||||| ||| || | |||| Sbjct 109752 GCGCATGATCATGTGCTGTGGTCTCTCG 109779 Score = 102 bits (112), Expect = 1e-15 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1628369 CCGCGCCGTAGCACTCGTGCAGG--CCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTC 1628426 || |||| ||||| ||| ||| | |||||| | ||| ||||| | || | |||||| Sbjct 109175 CCTCGCCATAGCAGTCG-GCAAGACCCGGGCAC-TCGTTGGGACACATCAGTGTCCAGTC 109232 Query 1628427 GCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTC 1628486 || || || | || ||| ||||| ||| |||| || ||| || ||||| Sbjct 109233 ACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTC 109292 Query 1628487 GCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTC 1628546 || || ||| ||||||||||||||||||||| |||||| | | |||| | ||| Sbjct 109293 ACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTC 109352 Query 1628547 GGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| ||||| ||||| |||||| ||||||||| || ||||||| ||| || Sbjct 109353 GGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACC 109406 >seq1510 Length=208424 Score = 143 bits (158), Expect = 3e-28 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| |||||||||||||||||||||| || || || |||| |||||| | || |||||| Sbjct 165388 GCCTCCAACTACCTCGACATCAAGCCCCTCCTTGACGTTGGCTGCAAGACCGTCGCCAAC 165329 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 165328 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 165280 >seq1201 Length=295393 Score = 136 bits (150), Expect = 5e-26 Identities = 193/267 (72%), Gaps = 11/267 (4%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| || ||||||||||| || |||||||||||||| ||||||| | | Sbjct 156541 TCGTTGGAGAAGGTTAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCG 156600 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 ||| || ||| |||||||||||||||||||||||| | | ||| |||| ||| ||| Sbjct 156601 AAAGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAG 156660 Query 869321 GTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACC 869377 ||| || || ||| ||||||| || |||||||| ||||| || | | Sbjct 156661 GTG--GA----CTTTGTGTCCGTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATG 156714 Query 869378 GACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATA 869436 | || | |||||||||||| ||||| | ||| | | ||| || ||||| | || Sbjct 156715 CAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGTAC-GCTGGGCAGGCTCCTTAATGTA 156773 Query 869437 GGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||||||| || || || || ||||| Sbjct 156774 GGTGTCGATGAGAAGGGAGTAAGTCTC 156800 Score = 131 bits (144), Expect = 2e-24 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| ||| || |||||||||||||| | || ||||| Sbjct 156205 GCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAGATG 156264 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| || |||||| ||| ||| ||||| | | Sbjct 156265 TTCTCCATGAAGTCGAAGGGGTTGGCCGATTTGTAGACCTTGTCGTTGCCGAGAGCGACC 156324 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | ||| || || ||||| ||||||||||| || ||| ||| || ||||||||| | | Sbjct 156325 AACAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGGTTGGAGTTCATGCCCAGG 156384 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| ||| ||||||| |||||||| ||| || |||||||| Sbjct 156385 AGGGCGCAAGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGCATCGACGATA 156444 Query 868931 AT 868932 || Sbjct 156445 AT 156446 >seq1046 Length=332835 Score = 114 bits (126), Expect = 2e-19 Identities = 235/336 (70%), Gaps = 24/336 (7%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCC-ATCTCGCGGTG 1726791 || |||||||||||||||||||||| || | | ||| |||| | | | ||||||||| Sbjct 247828 CCATCGGTGCCGTTCTTGAAGCCGACGGGGAAGGACAG-GCCGCTGGCGAGCTCGCGGTG 247770 Query 1726792 CACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCC-ACCAGGTCTGCCA--- 1726847 || ||||||||| || ||||| ||||| | |||||| |||| | | ||| || | Sbjct 247769 CAGCTGGCTCTCTGTGGTGCGGGCGCCGATGGCGCCG-ACGCTGATGAAGTCGGCGAGGA 247711 Query 1726848 AATAAGGGGCCACCAGA-GGACT-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGAC 1726905 | | |||| ||| || | ||| | |||| ||| | |||| || | ||||| Sbjct 247710 ACTGCGGGG-----AGATGGTGTCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGA 247659 Query 1726906 GACGAGATCGCGCAACAGGCGGCGC--GACGCCGTCAGGCCGTCGGCCAGGCGGCACGAC 1726963 | ||| ||||| || ||| ||| ||||| || ||| | | | | | | Sbjct 247658 GGTGAGGTCGCGGAAGAGGGTGCGGCTGACGCG--CAAGCCCTTGTTGATCTTGAAGGTG 247601 Query 1726964 CCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCG 1727023 ||||| ||| |||||| || ||||||||||| |||||||| ||||| ||||| ||| Sbjct 247600 GAGTCGATGTCCGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCG 247541 Query 1727024 ACATAGGCGCGCATGACCACGCAAAGCGCGTCGCCG 1727059 | |||||||||||||| ||||| || ||||||| Sbjct 247540 AGGTAGGCGCGCATGACGACGCAGAG---GTCGCCG 247508 >seq746 Length=525449 Score = 87.8 bits (96), Expect = 2e-11 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 1572461 TCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTG-GACAACGTGGTCGGCGTCGGTGTG 1572519 |||| || | ||||||||| || | | | | | | ||| || ||||| ||||| ||| Sbjct 256996 TCGACGACGAGCTGGGCGATACG-GTCACCCTCAGCGACCTCGAAGTCGGAGTCGGCGTG 257054 Query 1572520 GTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCCGAC 1572579 ||||||||| | ||| ||||||||||| ||||| || ||||||||||| |||||| Sbjct 257055 GTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTCCGCGTCGATGACGCCGGCGCCGGT 257114 Query 1572580 GTCGATG 1572586 ||||||| Sbjct 257115 GTCGATG 257121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107010850835788