Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1544 131 2e-25
seq632 120 3e-22
seq428 120 3e-22
seq442 109 5e-19
seq211 109 5e-19
seq643 95.1 1e-14
>seq1544
Length=892
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| |||| ||||| ||||| ||||| || || ||||| || || |
Sbjct 607 ATGCAGATCTTTGTTAAGACGCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGTTCT 548
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| || || |||||||| ||||| |||||
Sbjct 547 GATACCATCGACAACGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 488
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | |||||||||||||| || ||||| |||||| || | || | || || |||
Sbjct 487 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGAAGGACTTTGGCTGACTACAAC 428
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| || |||||||| || || ||| | ||||||||
Sbjct 427 ATCCAGAAGGAATCAACTCTTCACCTTGTGTTGCG 393
Score = 122 bits (134), Expect = 8e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || ||||||||||||||||| ||||| || || | |
Sbjct 379 ATGCAGATCTTTGTGAAGACTCTTACCGGTAAAACTATTACCCTCGAGGTCGAGAGCTCA 320
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | || |||||| || || || || || ||||| |||||
Sbjct 319 GACACCATTGACAACGTTAAGGCTAA-GATCCAGGATAAGGAGGGTATTCCTCCGGATCA 261
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | ||||||||||| || || |||||||| || || | | | ||||| ||
Sbjct 260 GCAGAGGTTGATCTTTGCGGGTAAGCAGCTGGAAGACGGAAGGACTCTTGCTGATTACAA 201
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || ||||| ||||| || ||| | ||| |||| || | || |||
Sbjct 200 TATCCAGAAGGAGTCGACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGC 152
>seq632
Length=500
Score = 120 bits (132), Expect = 3e-22
Identities = 154/211 (73%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || || || || ||||| || || || || || || ||
Sbjct 20 ACTATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCC 79
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| || || |||||| || ||| ||||| || |||||||||||||| || || ||
Sbjct 80 AGTGATACTATAGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCCCCTGAC 139
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
||||| | ||||||||||| || |||||| |||| ||| |||| |||| || ||
Sbjct 140 CAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTAC 199
Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTG 24910
||||| || ||||| || || || || ||||
Sbjct 200 AACATCCAGAAGGAGTCTACCCTTCATCTTG 230
>seq428
Length=571
Score = 120 bits (132), Expect = 3e-22
Identities = 152/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||| || | ||||| |||||||| ||||| || || ||||| || || || |
Sbjct 565 ATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGCAGC 506
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| |||||||||||||| || ||||| |||||
Sbjct 505 GACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAG 446
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| |||||||| || || || || ||||| || ||| | | | || | ||||| ||
Sbjct 445 CAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTACAAT 386
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910
|| || |||||||| || || || ||||
Sbjct 385 ATCCAGAAGGAATCTACTCTTCATCTTG 358
>seq442
Length=625744
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || ||||| || || | ||
Sbjct 417928 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 417869
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| || || || || || || ||||| ||
Sbjct 417868 GATACCATCGACAATGTGAAGTCTAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 417809
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| | || || ||||| || ||||| |||||| | | | |||| ||||| |||
Sbjct 417808 CAACGTCTTATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGTCTGATTACAAC 417749
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
|| || |||||||| || || |||||||| | || | ||||| |||
Sbjct 417748 ATCCAGAAGGAATCTACCCTTCACTTGGTTCTCCGTCTCCGCGGTGGC 417701
>seq211
Length=153984
Score = 109 bits (120), Expect = 5e-19
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
|||||||| ||||| ||||| || ||||| ||| |||||| |||| ||||||||||
Sbjct 108361 ACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGCTCAAAG 108420
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
|||||||||| ||||||||||| | || | ||||| |||||| || || | |
Sbjct 108421 CATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACGAGCAAG 108480
Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680
|| || | ||| || ||||||| |||||||||| || |||||||||
Sbjct 108481 CTGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCA 108533
>seq643
Length=80414
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || ||||| ||||| || || || || || | ||
Sbjct 65460 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 65401
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || ||||| ||
Sbjct 65400 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 65341
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||| ||||| || ||||| ||||| | | | | || || || |||
Sbjct 65340 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 65281
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || ||| | || |||| |||| |||||
Sbjct 65280 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCGCCTGCGTGGAGG 65234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449888804501920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |