Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1201 122 7e-23 seq632 95.1 1e-14 seq442 93.3 3e-14 seq428 86.0 5e-12 >seq1201 Length=295393 Score = 122 bits (134), Expect = 7e-23 Identities = 217/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 || ||||| ||||| | || | | || | || |||||| |||||| || ||||| Sbjct 56245 TCGGTCTCGGGGTTCTTGCACTTCTTGCAGAGAACGAACTTGTTGATGAAGCCGTCAAGG 56304 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 |||| || | |||| ||| || ||| || ||||||| ||| | || |||| | Sbjct 56305 TGGTCTTGCAGCTTAGCGGCGTTGTGAGAACCGTTGATGATCCAGCGGTCGTCAGCGGGG 56364 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 ||||| | || || |||||||||||| | || |||||||| | || | | ||| Sbjct 56365 TCGACGTTTGTCTGGGCGCCCAGCTCGAAGCCAAAGTACTTGATAACATAGGCGCCAGGA 56424 Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557 || |||| | || || | | || |||||| ||||| |||||||| ||||||||| Sbjct 56425 CGGGCAAGAGACTGAGCAACGCTGCTCAGGTTGACAATGACGGTCTTGATACCGTTGCCC 56484 Query 34558 TTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACA 34617 || || |||| ||||| | || ||| |||||||| ||||| |||||| ||| Sbjct 56485 TTGCCCTCGATCTTGGTGACGAGCTTTTCCATCTTGTAGCGATAGAAAGCGTCCTTGACA 56544 Query 34618 TTGCGGTTAACGTTCAC 34634 | ||| |||||| || Sbjct 56545 TCGCGACGAACGTTGAC 56561 >seq632 Length=500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || |||||||| || || | || ||||| Sbjct 23 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCCAGT 82 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| |||||| ||||||||||| | ||| || ||| Sbjct 83 GATACTATAGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCCCCTGACCAA 142 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| ||||||||| |||| |||| ||||||| || | || |||||| Sbjct 143 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAAC 202 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || || ||||| Sbjct 203 ATCCAGAAGGAGTCTAC 219 >seq442 Length=625744 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||| ||| |||| |||| || | Sbjct 417928 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 417869 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||| || || || ||| | ||| || || Sbjct 417868 GATACCATCGACAATGTGAAGTCTAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 417809 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | ||||||| || || || ||||| ||||||| | | || || | ||||||||| Sbjct 417808 CAACGTCTTATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGTCTGATTACAAC 417749 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || |||||||| | ||| |||| Sbjct 417748 ATCCAGAAGGAATCTACCCTTCACTTGGT 417720 >seq428 Length=571 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || ||||| ||||||| |||||||| ||| |||| ||| Sbjct 568 AAAATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGC 509 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||||||||| | || |||| Sbjct 508 AGCGACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGGAT 449 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | | |||| || ||||| ||||| || |||| | || |||| |||||| Sbjct 448 CAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTAC 389 Query 110450 AACATTCAAAAAGAATCTAC 110469 || || || || |||||||| Sbjct 388 AATATCCAGAAGGAATCTAC 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412833730723052