Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1201 178 2e-38 seq211 145 1e-28 seq1510 143 4e-28 seq2 125 1e-22 seq1046 91.5 2e-12 >seq1201 Length=295393 Score = 178 bits (196), Expect = 2e-38 Identities = 218/295 (74%), Gaps = 11/295 (4%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || ||||||||||| || |||||||||||||| ||||||| |||| || ||| Sbjct 156556 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAG 156615 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 |||||||||||||||||||||||| | ||||| |||| ||| || || | || | Sbjct 156616 AAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGT------GGACTTT 156669 Query 794497 TTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCG 794553 ||| ||||||| || ||||| || ||||| || | | |||| | |||||| Sbjct 156670 GTGTCCGTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCG 156729 Query 794554 ATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612 |||||| ||||| | ||| | || | | || ||||| | ||||||||||||||| || Sbjct 156730 ATGGCGTTGAAGAGATAGGTAC-GCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAG 156788 Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||| ||||| ||||| ||||| || || |||||||||||| || |||||| Sbjct 156789 GGAGTAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAG 156843 Score = 116 bits (128), Expect = 6e-20 Identities = 179/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| ||| || |||||||||||||| | | Sbjct 156197 TGACACCGGCCTTCTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAA 156256 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | ||||| |||||| | ||| |||||||||| |||| ||| ||| || Sbjct 156257 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGCCGATTTGTAGACCTTGTCGTTGCCGA 156316 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 ||||||| ||| ||| || || |||||||| || ||||| || ||| ||| || ||| Sbjct 156317 GAGCGAC-CAA-CAGACGATCAGCGACGAACTCGATGTATTGCTTCATCAGGTTGGAGTT 156374 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||| | ||| || ||||| | |||| | | ||||||| |||||||| ||| || Sbjct 156375 CATGCCCAGGAGGGCGCAAGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGC 156434 Query 794129 CTCGATGATGAT 794140 |||| ||| || Sbjct 156435 ATCGACGATAAT 156446 >seq211 Length=153984 Score = 145 bits (160), Expect = 1e-28 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| |||||||||||||| || || |||||||| Sbjct 109407 CTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGA 109466 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||| |||||||| || | ||||| ||| | ||| || | ||| | | || Sbjct 109467 GGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACATTTAGACC 109526 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||||||||| || || || | ||||| | ||||| || |||||||||||||| Sbjct 109527 AATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTC 109586 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || ||||| |||||||||| | |||||||| ||||| || | | | || || Sbjct 109587 AATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACC 109646 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 ||| ||||| | ||||||| Sbjct 109647 GGCGTTGAACAATGTGGGCG 109666 Score = 87.8 bits (96), Expect = 3e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| ||| || || || || || || ||| ||||||||||||||||||||| | Sbjct 109271 TCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGA 109330 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 |||| | | |||| || |||||| ||||| ||||| |||||| ||||||||| || Sbjct 109331 GGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGG 109390 Query 2071997 TGCGCTTGCCGCCGCC 2072012 ||||||| ||| || Sbjct 109391 GGCGCTTGTTGCCACC 109406 >seq1510 Length=208424 Score = 143 bits (158), Expect = 4e-28 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||||||||||||||||||||||||| || | || ||||||||||| |||||| Sbjct 165388 GCCTCCAACTACCTCGACATCAAGCCCCTCCTTGACGTTGGCTGCAAGACCGTCGCCAAC 165329 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 165328 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATCA 165280 >seq2 Length=655221 Score = 125 bits (138), Expect = 1e-22 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 |||||||| ||| | ||||||| || || |||||| || | || |||| || ||||| Sbjct 523084 GGCCGCCATAAGCTTGTCATCCTTGACGAAGCCGACAGCATGACATCGGGCGCGCAGCAA 523143 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 ||||| || || ||||| | || ||||||| || || || || | ||||| ||| Sbjct 523144 GCCCTTCGCCGCACAATGGAGATCTATTCCAACACAACCCGCTTCGCCTTCGCCTGTAAC 523203 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383 ||| | |||||||| | |||||| |||||||| |||||||| | || ||| Sbjct 523204 CAGTCCAACAAAATCATCGAACCTCTCCAGTCTCGTTGCGCAATCTTGCGTTACGCCCGC 523263 Query 2019384 CTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 |||||||||| ||| ||| | |||| ||| | || ||||| || ||||||||| Sbjct 523264 CTCACCGACGAGCAGGTCGTCAAGCGTTTGCTGCAAATCATCGAGGCTGAAAAGGTC 523320 >seq1046 Length=332835 Score = 91.5 bits (100), Expect = 2e-12 Identities = 226/332 (68%), Gaps = 12/332 (4%) Strand=Plus/Minus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCC-ATTTCGCGG 2175134 |||| ||||||||||| || || ||||| || || | ||| |||| | | | |||||| Sbjct 247830 TGCCATCGGTGCCGTTCTTGAAGCCGACGGGGAAGGACAG-GCCGCTGGCGAGCTCGCGG 247772 Query 2175135 TGCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCC-ACGAGGTCTGCCAA 2175193 |||| ||||||||| |||||||| ||||| | |||||| |||| | || ||| || | Sbjct 247771 TGCAGCTGGCTCTCTGTGGTGCGGGCGCCGATGGCGCCG-ACGCTGATGAAGTCGGCGAG 247713 Query 2175194 ATAGGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGAC 2175253 | ||| | | | ||| | |||| || | |||| |||| || | || Sbjct 247712 GAACTGCGGGGAGATGGTGTCGAGCATCTCGCTGGCGATGGGCATGCCGGCGGAGGTGA- 247654 Query 2175254 CAGGTCGCGCAGCAGTCGACGCGATGTGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGT 2175312 ||||||| | || || | || ||| | ||| | | | | | || Sbjct 247653 --GGTCGCGGAAGAGGGTGCG-GCTGACGCGCAAGCCCTTGTTGATCTTGAAGGTGGAGT 247597 Query 2175313 CGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACAT 2175372 ||| ||| |||||| || ||||||||||| |||||||| ||||| ||||| |||| | Sbjct 247596 CGATGTCCGGGTCGTTGATGAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAGGT 247537 Query 2175373 AGGCGCGCATGACCACCAGGAGAGCGTCGCCG 2175404 ||||||||||||| || | |||| ||||||| Sbjct 247536 AGGCGCGCATGACGAC--GCAGAG-GTCGCCG 247508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916080030186596