Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq643 159 2e-34 seq835 111 1e-19 seq442 107 1e-18 seq1544 98.7 6e-16 seq632 98.7 6e-16 >seq643 Length=80414 Score = 159 bits (176), Expect = 2e-34 Identities = 177/234 (76%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | |||||| ||||| | ||||||||||||||| ||||| ||||| || Sbjct 65234 CCTCCACGCAGGCGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 65293 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || || || |||||||||||||||||||| || |||||||| | || Sbjct 65294 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 65353 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | ||||||||||| | || || ||||| || | ||||| || | ||| Sbjct 65354 ATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTC 65409 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || |||| ||| || ||||| |||||||||||||| || |||||||||||||| Sbjct 65410 CACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 65463 >seq835 Length=459924 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| | || || || ||||| |||||||||| Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || |||||||| | || | ||||||||||| | || || ||||| Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333 Query 34968 A 34968 | Sbjct 159332 A 159332 >seq442 Length=625744 Score = 107 bits (118), Expect = 1e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||||||||||||| ||||| || ||| | || | || Sbjct 417432 AGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCC 417491 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| | || | |||||||| || Sbjct 417492 TCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCC 417551 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | | ||| || || | ||| |||||| Sbjct 417552 TGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTC 417611 Query 34946 TTTCCCGTGAGGGTCTTTACAA 34967 || || ||||| ||||| |||| Sbjct 417612 TTGCCAGTGAGAGTCTTGACAA 417633 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||||||||| ||||| || ||| |||| | || Sbjct 417204 AGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 417263 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| || || |||||||| | || | ||||||||||| Sbjct 417264 TCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 417323 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | ||| || ||| Sbjct 417324 TGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTC 417383 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || || |||||||| Sbjct 417384 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 >seq1544 Length=892 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||| ||||| ||||| | || | || | || Sbjct 624 AGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCC 683 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || ||||||||||||||||| ||||||||||| | || | || |||||||| Sbjct 684 TCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCC 743 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| |||||| || | || |||||| Sbjct 744 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTC 803 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || ||||| || || || || ||||| Sbjct 804 TTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835 >seq632 Length=500 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| ||||||||| ||||| ||||| || | | | |||| Sbjct 234 AGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCT 175 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || || || || ||||||| || || ||||| | || | || || ||||| Sbjct 174 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCC 115 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| || | |||| | ||| ||| ||| || |||| || || || Sbjct 114 TGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTT 55 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||||||||| || ||||||||||| Sbjct 54 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686591888116