Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq632 95.1 1e-14 seq442 93.3 3e-14 seq1544 82.4 6e-11 >seq632 Length=500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || |||||||| || || | || ||| | | Sbjct 23 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCCAGT 82 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| |||||| || |||||||| | ||| || || Sbjct 83 GATACTATAGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCCCCTGACCAA 142 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| ||||||||| |||| || | || |||| || | ||||||||| Sbjct 143 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAAC 202 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 203 ATCCAGAAGGAGTCTAC 219 >seq442 Length=625744 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 107566 TTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGTCG 107625 ||||||| ||| | || ||||| ||||| ||| |||| |||| || |||| ||| ||| Sbjct 417633 TTGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGCGACACTATCG 417574 Query 107626 GCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTA 107685 | | || || ||||| ||||| || ||| | ||| || |||||| | || | Sbjct 417573 ACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCA 417514 Query 107686 TTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGG 107745 | | || || || ||||| ||||||| || | | |||||||||||||| |||| Sbjct 417513 TCTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCCGACTACAACATTCAGAAGG 417454 Query 107746 AGTCTACGTTGCACATGGT 107764 ||||||| | ||| |||| Sbjct 417453 AGTCTACCCTTCACTTGGT 417435 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || | || ||||| || |||||| | || |||| | Sbjct 417415 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACGATTACCTTAGAGGTGGAGTCGTCA 417356 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| || ||| Sbjct 417355 GACACAATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 417296 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| ||||| ||||| ||||||| | || | | ||||||||| Sbjct 417295 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 417236 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| ||||| Sbjct 417235 ATTCAGAAGGAGTCGACCCTCCACTTGGTG 417206 >seq1544 Length=892 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || || |||||||| ||| |||| ||| | Sbjct 607 ATGCAGATCTTTGTTAAGACGCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGTTCT 548 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || ||||| ||||| ||||| | || ||||||| Sbjct 547 GATACCATCGACAACGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 488 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||||| ||||| | | || |||| ||||||||| Sbjct 487 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGAAGGACTTTGGCTGACTACAAC 428 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| || || | ||| | |||||| Sbjct 427 ATCCAGAAGGAATCAACTCTTCACCTTGTGTTG 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869196909596