Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq428 122 7e-23 seq1544 104 2e-17 >seq428 Length=571 Score = 122 bits (134), Expect = 7e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | |||||| || ||||| || || || || ||||| || | |||||| ||| Sbjct 354 AGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCT 413 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || ||||| | ||||| | ||||||||||| || ||||| ||||||||| Sbjct 414 TCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCT 473 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || || |||||| | || | ||||| || || || || || || || Sbjct 474 TG-AATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGT 532 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || |||| |||||| || || ||||||||||| Sbjct 533 TTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568 >seq1544 Length=892 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||||||| | ||||| || || || || || || || ||||| ||| Sbjct 153 CCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 212 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || || || || || ||| | ||||| || ||||||||||| ||| Sbjct 213 AGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGA 272 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| || || || | || || || | || | ||||| || || || Sbjct 273 ATACCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACC 332 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||||||| || || | || || ||||| |||||||| Sbjct 333 TCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||| | ||||| || ||||| || || ||||| || || || | || | Sbjct 392 ACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCC 451 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || || ||| | ||||| || ||||||||||| || || || || || Sbjct 452 ATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTT 511 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || || || | || | || |||||| || || || || || || Sbjct 512 ATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACCTCGAGGGTGAT 571 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || | || |||||||| |||||||| Sbjct 572 GGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211857240524