Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq632 141 2e-28 seq1544 129 1e-24 seq442 100 6e-16 seq428 91.5 3e-13 >seq632 Length=500 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || || ||||| || ||||| || || || || || | |||| || Sbjct 238 ACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCC 179 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||||| ||||||||||| | ||| ||||| || || || |||||||| || Sbjct 178 ATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTT 119 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| ||||| |||||||| || |||||| | || || || || | ||| || Sbjct 118 GTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGAT 59 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | ||||| || || |||||||| Sbjct 58 TGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 >seq1544 Length=892 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || | ||| ||||| ||||| ||||| || || || |||| Sbjct 379 TACCACCACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAG 438 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | || || || || || || ||||| |||||||| | || || ||||| |||| Sbjct 439 CCAAAGTCCTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAG 498 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||| || ||||| || || || || || || |||||| | || | Sbjct 499 GGATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAA 558 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || || || || | |||||| ||||| |||||||| Sbjct 559 CCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | || || || ||||| ||||| || || || |||| Sbjct 607 TACCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAG 666 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | |||||| || || |||||||| || ||||| || | ||| || || || | Sbjct 667 CAAGAGTACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGG 726 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| || || || || || || || ||| | || | Sbjct 727 GAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGA 786 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || ||||| || |||| || || || ||||| ||||| Sbjct 787 CCTCGAGAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835 >seq442 Length=625744 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || || || || || || | | ||| Sbjct 417201 CGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCG 417260 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 417261 TCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTG 417320 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| | || || || || || || || | || || || || || ||| Sbjct 417321 TCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATC 417380 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 417381 GTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 >seq428 Length=571 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || ||||||||||| ||||| ||||| ||||| | | | | || ||| Sbjct 354 AGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCT 413 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || ||||| || || | | || ||||| ||||| || ||||| || ||| Sbjct 414 TCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCT 473 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| | || ||||| || || || || | || || || | || || || Sbjct 474 TGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTT 533 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || | || || || || ||||||||| Sbjct 534 TTCCCGGTTAGGGTTTTCACGAAAATCTGCATT 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981807525410196