Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq428 134 1e-26
seq442 127 2e-24
seq643 120 3e-22
seq835 109 5e-19
seq1544 105 6e-18
>seq428
Length=571
Score = 134 bits (148), Expect = 1e-26
Identities = 150/198 (76%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || || ||||| |||||||||||| ||| ||| | | | || || |||||||| ||
Sbjct 369 GTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCA-TCTTCAAGCTGCTTACC 427
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| | |||||||| || |||||||| ||||| ||||| ||||| |||
Sbjct 428 AGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTT 487
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | |||||| || ||| || |||| ||||| |||||| ||||| || ||
Sbjct 488 GACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGT 547
Query 133643 TTTTACGAAAATCTGCAT 133660
||| ||||||||||||||
Sbjct 548 TTTCACGAAAATCTGCAT 565
>seq442
Length=625744
Score = 127 bits (140), Expect = 2e-24
Identities = 147/196 (75%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
|| || | ||| ||||| ||||| || ||||| ||| | || |||| ||||||||
Sbjct 417438 AAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT--ACGACCGTCCTCGA 417495
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||||||||| ||| | ||||| |||||||||||||| || ||||| ||||| || ||
Sbjct 417496 GCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGA 417555
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||| ||||| | || | |||||| | | |||||| |||| ||||| ||| ||||
Sbjct 417556 TCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGC 417615
Query 133633 CGGTCAGAGTTTTTAC 133648
| || ||||| || ||
Sbjct 417616 CAGTGAGAGTCTTGAC 417631
Score = 125 bits (138), Expect = 7e-24
Identities = 154/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | ||| || || ||||| || |||||||| || ||| | | | ||||| ||
Sbjct 417723 AAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCA-TCCTCAAG 417781
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||||||||| ||| |||| || || ||||||||||| |||||||| ||||| || |||
Sbjct 417782 CTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGAT 417841
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||| | | || | || |||| | |||||| |||| ||||| ||| |||||
Sbjct 417842 CTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 417901
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| || || || ||||| |||||||||
Sbjct 417902 AGTGAGGGTCTTGACGAAGATCTGCATG 417929
Score = 123 bits (136), Expect = 2e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||| ||||| || ||||| ||| | ||| |||||| |||
Sbjct 417210 AAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGC 417269
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || || | || || |||||||||||||| |||||||| |||||||| ||||
Sbjct 417270 TGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATC 417329
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | ||||| | | |||||| || | ||| | || ||||||
Sbjct 417330 TTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTGCCG 417389
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || || ||||||||||||||
Sbjct 417390 GTCAGGGTCTTCACGAAAATCTGCAT 417415
>seq643
Length=80414
Score = 120 bits (132), Expect = 3e-22
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
|||| ||| ||||| || ||||| ||| | ||| ||||||||||||||| ||
Sbjct 65263 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 65322
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 65323 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 65382
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || || || || || ||
Sbjct 65383 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGT 65442
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 65443 CTTGACGAAGATCTGCATG 65461
>seq835
Length=459924
Score = 109 bits (120), Expect = 5e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||| ||||||||||| ||| | || | |||||||||||||| |||||||| |||||
Sbjct 159478 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 159419
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | |||||||| || ||| || || | ||| |
Sbjct 159418 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAAT 159359
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652
||| || || ||||| || || ||||||
Sbjct 159358 GGTCTTACCCGTCAGGGTCTTCACGAAA 159331
>seq1544
Length=892
Score = 105 bits (116), Expect = 6e-18
Identities = 148/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514
||| | ||| || || ||||| || ||||| || | | || |||| ||||||||||
Sbjct 632 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGT--ACGACCGTCCTCGAGC 689
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|| || || ||| | || || || |||||||| || || || ||||||||||| ||||
Sbjct 690 TGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATC 749
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | ||||| | ||| || |||| |||| ||| || |||
Sbjct 750 TTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCG 809
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| ||||| ||||| || |||||
Sbjct 810 GTCAGGGTTTTAACGAATATTTGCAT 835
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| ||||||||||| | | || ||| || |||||||| ||
Sbjct 182 GGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACC 241
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | || |||||| || ||||| || || ||||| || |||||| |||
Sbjct 242 CGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCCTGGATCTTAGCCTT 301
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | |||| ||||| | | ||| || |||| ||| | ||||| ||||| |||||
Sbjct 302 AACGTTGTCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTTTTACCGGTAAGAGT 361
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || ||||||||
Sbjct 362 CTTCACAAAGATCTGCAT 379
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||||||||| || || | || | || |||||| || |||||||| ||||||||
Sbjct 453 TCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTA 512
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||| | | || | || || | ||| || |||| ||||| |
Sbjct 513 TCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACCTCGAGGGTGATG 572
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| ||||| || || || || || ||||||||
Sbjct 573 GTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483411349123360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |