Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq428 134 1e-26 seq442 127 2e-24 seq643 120 3e-22 seq835 109 5e-19 seq1544 105 6e-18 >seq428 Length=571 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| |||||||||||| ||| ||| | | | || || |||||||| || Sbjct 369 GTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCA-TCTTCAAGCTGCTTACC 427 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | |||||||| || |||||||| ||||| ||||| ||||| ||| Sbjct 428 AGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTT 487 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| || ||| || |||| ||||| |||||| ||||| || || Sbjct 488 GACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGT 547 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 548 TTTCACGAAAATCTGCAT 565 >seq442 Length=625744 Score = 127 bits (140), Expect = 2e-24 Identities = 147/196 (75%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| ||| | || |||| |||||||| Sbjct 417438 AAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT--ACGACCGTCCTCGA 417495 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||||||| ||| | ||||| |||||||||||||| || ||||| ||||| || || Sbjct 417496 GCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGA 417555 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | |||||| | | |||||| |||| ||||| ||| |||| Sbjct 417556 TCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGC 417615 Query 133633 CGGTCAGAGTTTTTAC 133648 | || ||||| || || Sbjct 417616 CAGTGAGAGTCTTGAC 417631 Score = 125 bits (138), Expect = 7e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || ||||| || |||||||| || ||| | | | ||||| || Sbjct 417723 AAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCA-TCCTCAAG 417781 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| || || ||||||||||| |||||||| ||||| || ||| Sbjct 417782 CTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGAT 417841 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | || |||| | |||||| |||| ||||| ||| ||||| Sbjct 417842 CTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCC 417901 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 417902 AGTGAGGGTCTTGACGAAGATCTGCATG 417929 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || ||||| ||| | ||| |||||| ||| Sbjct 417210 AAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGC 417269 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || |||||||||||||| |||||||| |||||||| |||| Sbjct 417270 TGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATC 417329 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | | |||||| || | ||| | || |||||| Sbjct 417330 TTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTGCCG 417389 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||||||||| Sbjct 417390 GTCAGGGTCTTCACGAAAATCTGCAT 417415 >seq643 Length=80414 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||| ||| ||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 65263 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 65322 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 65323 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 65382 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 65383 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGT 65442 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 65443 CTTGACGAAGATCTGCATG 65461 >seq835 Length=459924 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| ||||||||||| ||| | || | |||||||||||||| |||||||| ||||| Sbjct 159478 GTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 159419 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||||| || ||| || || | ||| | Sbjct 159418 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAAT 159359 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 159358 GGTCTTACCCGTCAGGGTCTTCACGAAA 159331 >seq1544 Length=892 Score = 105 bits (116), Expect = 6e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||| || || ||||| || ||||| || | | || |||| |||||||||| Sbjct 632 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGT--ACGACCGTCCTCGAGC 689 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || ||| | || || || |||||||| || || || ||||||||||| |||| Sbjct 690 TGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATC 749 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | ||| || |||| |||| ||| || ||| Sbjct 750 TTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCG 809 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| ||||| || ||||| Sbjct 810 GTCAGGGTTTTAACGAATATTTGCAT 835 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| ||||||||||| | | || ||| || |||||||| || Sbjct 182 GGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACC 241 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || |||||| || ||||| || || ||||| || |||||| ||| Sbjct 242 CGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCCTGGATCTTAGCCTT 301 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | ||| || |||| ||| | ||||| ||||| ||||| Sbjct 302 AACGTTGTCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTTTTACCGGTAAGAGT 361 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 362 CTTCACAAAGATCTGCAT 379 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || || | || | || |||||| || |||||||| |||||||| Sbjct 453 TCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTA 512 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | || || | ||| || |||| ||||| | Sbjct 513 TCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACCTCGAGGGTGATG 572 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || || || || |||||||| Sbjct 573 GTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483411349123360