Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1544 150 4e-31 seq632 123 6e-23 seq428 120 7e-22 >seq1544 Length=892 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || |||||||| || ||||| ||||| | || || || |||||||| Sbjct 604 CAGATCTTTGTTAAGACGCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGTTCTGAT 545 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || |||||||| ||||| || Sbjct 544 ACCATCGACAACGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAGCAG 485 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| |||||||||||| | || ||||||||||||||||| || |||||| || Sbjct 484 AGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGAAGGACTTTGGCTGACTACAACATC 425 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || |||||||||||||| ||| | ||||| Sbjct 424 CAGAAGGAATCAACTCTTCACCTTGTGTTGCGTCTTCG 387 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || |||||| | || || || ||||||||||| |||| Sbjct 820 AAAACCCTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCTGACACCATCGACAAC 761 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || ||| ||| | || |||||| Sbjct 760 GTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAGCAACGTCTGATCTTC 701 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||| ||| | || || || | ||| | || || |||||| ||||||| || || Sbjct 700 GCCGGAAAACAGCTCGAGGACGGTCGTACTCTTGCTGACTACAACATCCAGAAGGAATCA 641 Query 206365 ACTCTTCACCTTGT 206378 || ||||| ||||| Sbjct 640 ACCCTTCATCTTGT 627 Score = 113 bits (124), Expect = 1e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| |||||||||||||| || || ||||||| || ||||||||||||||| Sbjct 387 CGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTC 446 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || |||||||||||||| ||||| | || || ||| Sbjct 447 CTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGA 491 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| || || | || || || || || ||| Sbjct 376 CAGATCTTTGTGAAGACTCTTACCGGTAAAACTATTACCCTCGAGGTCGAGAGCTCAGAC 317 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| ||||| || Sbjct 316 ACCATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGTATTCCTCCGGATCAGCAG 257 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || |||||| ||||||| ||||||||| | || |||||||| || Sbjct 256 AGGTTGATCTTTGCGGGTAAGCAGCTGGAAGACGGAAGGACTCTTGCTGATTACAATATC 197 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 196 CAGAAGGAGTCGACCCTTCACCTTGT 171 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| || ||||| ||||||| ||| || ||||| | ||||||||| |||||| Sbjct 171 ACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCC 230 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| || || ||||| | || || ||| Sbjct 231 AGCTGCTTACCCGCAAAGATCAACCTCTGCTGA 263 >seq632 Length=500 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| |||||| | || || || ||| Sbjct 26 CAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCCAGTGAT 85 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || |||||| || |||||||||||| || ||| || Sbjct 86 ACTATAGAAAATGTTAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCCCCTGACCAACA 144 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | ||||| || || || |||||||||||||| || || ||| |||| |||||| | Sbjct 145 GAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAACAT 204 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| |||||||| ||||| ||||| Sbjct 205 CCAGAAGGAGTCTACCCTTCATCTTGT 231 >seq428 Length=571 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| | || || || || ||||| |||| Sbjct 550 AAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 491 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| || ||||| || | | || ||| Sbjct 490 GTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAGCAGCGTTTGATTTTC 431 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | ||||||||| | || |||||||||||||| ||||||| || ||| Sbjct 430 GCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTACAATATCCAGAAGGAATCT 371 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| |||||| | || ||||| Sbjct 370 ACTCTTCATCTTGTTCTCAGGCTTCG 345 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| || | |||||| ||||||||||| || ||||||| ||| || || ||||| || Sbjct 345 CGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTG 404 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||| |||||||| || ||||| || | || || ||| Sbjct 405 CGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGA 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181797117788444