Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq442 86.0 6e-12
seq632 84.2 2e-11
>seq442
Length=625744
Score = 86.0 bits (94), Expect = 6e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||||| || | | | ||||| || ||||||||||||||| | |||
Sbjct 417194 ACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGT 417253
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| || || ||||| ||||| | | |||| |||||||| || || || || |||||
Sbjct 417254 GCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCC 417313
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || || || || | | || | || || | || |||||| || |
Sbjct 417314 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAA 417373
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| | ||| || || ||||| || || | ||||||||||||
Sbjct 417374 GGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415
>seq632
Length=500
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||| || || | |||||| | ||||||||| | |
Sbjct 216 GACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTGTTTACCAGCA 157
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | | |||||| || || || || |||||||| || ||| || ||| |
Sbjct 156 AAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAACA 97
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | |||||| | ||||| || || | || | ||||| || || || || ||
Sbjct 96 TTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTG 37
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 36 ACGAAGATCTGCAT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476601882251040
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |