Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq1112 145 9e-30
>seq1112
Length=320824
Score = 145 bits (160), Expect = 9e-30
Identities = 406/631 (64%), Gaps = 49/631 (8%)
Strand=Plus/Minus
Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931
|||| ||| | |||||| || || | || ||||||| | || || | ||||||
Sbjct 256368 ATCTCCAGCATCGGGAAGTCCCGCGGCTCCCGCTCCAGCTGCACCTTGAGCGCGTCCACG 256309
Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991
|||| ||| ||||||||||| |||| | |||| | | || || ||| ||
Sbjct 256308 TGGTCCGCGTAAACGTGCGCGTCGCCCATGACGTGCGTGAGGCTGCCAGGAACCAGGTCG 256249
Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051
| | || | || | ||||| || ||||||| |||||| || |||||||| || || ||
Sbjct 256248 GACGCGCGCGCAATCATGTGTGTCAGCAGCGCGTAGCTCGCAATGTTGAACGGCACGCCG 256189
Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA------------------------- 147086
|| |||||||| | || | ||||||||| |||||
Sbjct 256188 AGCCCCATGTCGCAGGAGCGCTGGTACAGTTGGCAGTGCAGGTGTCCCTTGGGCTTCTCG 256129
Query 147087 -----CGAGAGCTCCCCGTCG---GCC------------ACGTAAAACTGGCACAGGATG 147126
||| || || || || ||| ||||| |||||| | |||
Sbjct 256128 TCCGTCGACGGCGCCGCGCCGCGTGCCCGCGGGTACGAGACGTAGAACTGGGCAAACATG 256069
Query 147127 TGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGC 147186
|||||||||||||| ||||| |||||||||||||||||| || || || |
Sbjct 256068 TGGCACGGCGGCAGGGCCATCTTCTTCAGGTCCGCGGGGTTCCACGCGCTGAGCAGGATG 256009
Query 147187 CGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCC 147246
|| | | | ||||||| |||| | || | ||| ||| |||||||| ||||||
Sbjct 256008 CGGCGGTCGTAGGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCGAGCTGGTCGACGCCC 255949
Query 147247 TGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAG 147306
||||| ||||| ||| ||| ||||| || |||||||| | ||| ||||||
Sbjct 255948 TGGCCTGTGTAGTCCGTCTTTGCGTCGACGTATTCCGCGCCAAAGTGTCGCCATTGGAAG 255889
Query 147307 CCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAAC 147366
|| || || || || || |||||| | | ||| |||| ||| | | | ||| |||
Sbjct 255888 CCATAGACGGGGCCGAGATCGCCGACTTCGCGGTGGGAGAGGCCGACGCTGTCGAGGAAC 255829
Query 147367 TCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC--CTTGGCGGAGAGCTCCTTAGAGT 147424
||| |||| |||| | |||||||||| || || | | || ||| | || |||
Sbjct 255828 TCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGGCCTCGCTGAGGG--CCAGAGACG 255771
Query 147425 CCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455
|||| |||| || ||||||||| |||||
Sbjct 255770 ACGTGTTGCCCTCGACGAACCAGAGGAGCTC 255740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583476592809600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |