Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1112 145 9e-30 >seq1112 Length=320824 Score = 145 bits (160), Expect = 9e-30 Identities = 406/631 (64%), Gaps = 49/631 (8%) Strand=Plus/Minus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 |||| ||| | |||||| || || | || ||||||| | || || | |||||| Sbjct 256368 ATCTCCAGCATCGGGAAGTCCCGCGGCTCCCGCTCCAGCTGCACCTTGAGCGCGTCCACG 256309 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 |||| ||| ||||||||||| |||| | |||| | | || || ||| || Sbjct 256308 TGGTCCGCGTAAACGTGCGCGTCGCCCATGACGTGCGTGAGGCTGCCAGGAACCAGGTCG 256249 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 | | || | || | ||||| || ||||||| |||||| || |||||||| || || || Sbjct 256248 GACGCGCGCGCAATCATGTGTGTCAGCAGCGCGTAGCTCGCAATGTTGAACGGCACGCCG 256189 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA------------------------- 147086 || |||||||| | || | ||||||||| ||||| Sbjct 256188 AGCCCCATGTCGCAGGAGCGCTGGTACAGTTGGCAGTGCAGGTGTCCCTTGGGCTTCTCG 256129 Query 147087 -----CGAGAGCTCCCCGTCG---GCC------------ACGTAAAACTGGCACAGGATG 147126 ||| || || || || ||| ||||| |||||| | ||| Sbjct 256128 TCCGTCGACGGCGCCGCGCCGCGTGCCCGCGGGTACGAGACGTAGAACTGGGCAAACATG 256069 Query 147127 TGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGC 147186 |||||||||||||| ||||| |||||||||||||||||| || || || | Sbjct 256068 TGGCACGGCGGCAGGGCCATCTTCTTCAGGTCCGCGGGGTTCCACGCGCTGAGCAGGATG 256009 Query 147187 CGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCC 147246 || | | | ||||||| |||| | || | ||| ||| |||||||| |||||| Sbjct 256008 CGGCGGTCGTAGGGGTTCGTCTTGAGCTTGTGGATGACCTCGGCGAGCTGGTCGACGCCC 255949 Query 147247 TGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAG 147306 ||||| ||||| ||| ||| ||||| || |||||||| | ||| |||||| Sbjct 255948 TGGCCTGTGTAGTCCGTCTTTGCGTCGACGTATTCCGCGCCAAAGTGTCGCCATTGGAAG 255889 Query 147307 CCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAAC 147366 || || || || || || |||||| | | ||| |||| ||| | | | ||| ||| Sbjct 255888 CCATAGACGGGGCCGAGATCGCCGACTTCGCGGTGGGAGAGGCCGACGCTGTCGAGGAAC 255829 Query 147367 TCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC--CTTGGCGGAGAGCTCCTTAGAGT 147424 ||| |||| |||| | |||||||||| || || | | || ||| | || ||| Sbjct 255828 TCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGGCCTCGCTGAGGG--CCAGAGACG 255771 Query 147425 CCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 |||| |||| || ||||||||| ||||| Sbjct 255770 ACGTGTTGCCCTCGACGAACCAGAGGAGCTC 255740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583476592809600