Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1201 197 2e-44 seq211 136 6e-26 >seq1201 Length=295393 Score = 197 bits (218), Expect = 2e-44 Identities = 360/514 (70%), Gaps = 26/514 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||||||||| || ||||| || |||||| | || Sbjct 157056 GATTTGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCTGAGGAGATTGATT 156998 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| | | | ||| || ||| | ||| Sbjct 156997 TGTCCAAGGATCTCCACG----ACTGGAACAACAAGATCAACGATGATGAGAAGTACTTC 156942 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| | |||||||| || |||||| ||| |||||||| |||||||||| Sbjct 156941 ATCTCTCACATTCTCGCCTTCTT-CGCCGCTTCCGACGGCATCGTCAATGAGAACCTGGT 156883 Query 1455948 CGGCCGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 | || || | || || ||||| | || ||||| || | || ||||| ||||||| Sbjct 156882 TGAGCGTTTCTCTGGC-GAAGTCCAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGA 156824 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || ||||| ||||| || || ||||| || || |||||||||||| | |||| Sbjct 156823 TCATGATGGAGAACATTCACTCCGAGACTTACTCCCTTCTCATCGACACCTACATTAAGG 156764 Query 1456067 ACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 | || | | || | ||| | ||||| |||||||||||| | || | | | || Sbjct 156763 AGCCTGCCCAGC-GTACCTATCTCTTCAACGCCATCGACACCATCCCCTGCATCCGTAAG 156705 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||| |||||||| || ||||||| ||| || || || ||| ||| ||| Sbjct 156704 AAGGCTGACTGGGCCTTGCGCTGGATCACGGACACAAAG----TCCAC-CTTCGCCCAGC 156650 Query 1456183 GGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | ||||| | |||||||| ||||||||||||||| ||| || |||| | |||||| Sbjct 156649 GCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCT 156590 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | |||||||||||||| || |||||||||||||| Sbjct 156589 TCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 156556 Score = 109 bits (120), Expect = 8e-18 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || |||||||| || ||| |||||||| ||||||| | | |||| | ||||| || Sbjct 156446 ATTATCGTCGATGCTGTCAAGATCGAGCAAGAGTTCCTGACCGAGGCTCTGCCTTGCGCC 156387 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| | ||||||||| ||| | || ||| || ||||| || || ||||| || || | Sbjct 156386 CTCCTGGGCATGAACTCCAAC-CTGATGAAGCAATACATCGAGTTC-GTCGCTGATCGTC 156329 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 || | | || |||||| || | ||| |||| |||||||||| ||| | ||| Sbjct 156328 TGTTGGTCGCTCTCGGCAACG-ACAAGGTCTACAAATCGGCCAACCCCTTCGACTTCATG 156270 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| || ||| || || | ||| ||| Sbjct 156269 GAGAACATCTCTCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGACTACCAG 156210 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 156209 AAGGCCGGTGTCA 156197 >seq211 Length=153984 Score = 136 bits (150), Expect = 6e-26 Identities = 205/289 (71%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTG-TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| |||| || |||||| || ||||||| | || || ||||| || || | Sbjct 109694 ATGTCG-AGCAAGTGCTTCACCCACGCTTCGCCCACATTGTTCAACGCCGGTACTCCCCA 109636 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 | ||| ||||| |||||||| | |||||||||| || || || ||||||||||| Sbjct 109635 GGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAAGACTCTATTGAGGGCATCTA 109576 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| || ||| ||||| | || || || |||||||||||| ||| | | Sbjct 109575 CGACACTCTGAAGACCTGCGCCATGATATCAAAAATGGCCGGCGGCATTGGTCTAAATGT 109516 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||| | || ||| | ||| ||||| | || |||||||| ||| |||||||| | Sbjct 109515 CCACCGCATCCGTGCCACTGGCTCCTACATCGCCGGCACCAATGGCACCTCCAACGGTGT 109456 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | || ||||| ||||| || ||| |||| || ||||| ||||||||| Sbjct 109455 TACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCTATGTCGACCAG 109407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177660349325368