Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq428 123 2e-23 seq1544 122 8e-23 seq442 122 8e-23 seq643 116 3e-21 seq835 105 6e-18 >seq428 Length=571 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | ||| | || | ||| | ||| ||||| || || |||||||||| Sbjct 337 TTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGG 396 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||||||| || | || || ||||||||||| || || ||||| |||||||| |||| || Sbjct 397 CCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAG 456 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | | || ||||| ||||| ||| | | | | | |||||||| || | Sbjct 457 GGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGA 516 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 |||| | ||||| ||||| || || | |||||||| || ||||||||| || Sbjct 517 CCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTTG 569 >seq1544 Length=892 Score = 122 bits (134), Expect = 8e-23 Identities = 147/196 (75%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || |||||||| || | || | |||| |||||||||||||||||||| Sbjct 188 CTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAA 247 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||| |||| ||||| | |||||| ||| |||| || || | | || Sbjct 248 GATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCCTGGATC-TTAGCCTTAACGT 306 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | ||||| |||| || ||||| | || || |||||||| || | ||| | Sbjct 307 TGTCAATGGTGTCTGAGCTC---TCGACCTCGAGGGTAATAGTTTTACCGGTAAGAGTCT 363 Query 35721 TCACAAATATCTGCAT 35736 ||||||| |||||||| Sbjct 364 TCACAAAGATCTGCAT 379 >seq442 Length=625744 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || |||||| ||||||||||| |||| | ||| || |||| || Sbjct 417206 CACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 417265 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| ||||| || | ||||||||||| | || | || |||||||||| Sbjct 417266 AAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 417325 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 |||||| ||| | |||| | | ||||| ||| |||||||| | || ||||| | Sbjct 417326 GATCTTGGACTTGA-CGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCT 417384 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||| || ||||| || |||||||| Sbjct 417385 TGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 Score = 111 bits (122), Expect = 1e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| ||||||||||| |||| | ||| || |||| || Sbjct 417435 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCG 417494 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || || | ||||||||||| | |||| || |||||| ||| | Sbjct 417495 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 417554 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | |||| | | |||||||| || |||||||| | ||||| || || Sbjct 417555 ATCTTGGACTTGA-CGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTT 417613 Query 35707 ACCCGTCAAAGTTTTCACAA 35726 || || | ||| || |||| Sbjct 417614 GCCAGTGAGAGTCTTGACAA 417633 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||| || ||||||||||| | |||||| || | || || Sbjct 417720 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCCTCA 417779 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || || | || |||||||| | || | || |||||| ||| | Sbjct 417780 AGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 417839 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | || ||| || |||||||| | ||||| || || Sbjct 417840 ATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 417899 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || || || |||||||| Sbjct 417900 CCAGTGAGGGTCTTGACGAAGATCTGCAT 417928 >seq643 Length=80414 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| |||| | ||| || |||| || |||||||| || Sbjct 65264 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 65323 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || |||| ||||||||||| | || | || |||||||||| |||||| ||| Sbjct 65324 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 65383 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||| || |||||||| | ||||| || |||||||| | || Sbjct 65384 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 65443 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 65444 TTGACGAAGATCTGCAT 65460 >seq835 Length=459924 Score = 105 bits (116), Expect = 6e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || |||| || |||||||| || || || | Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||||| || || ||||| | || || || |||||||||| || ||||| | Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333 Query 35727 A 35727 | Sbjct 159332 A 159332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450784786985120