Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq428 123 2e-23
seq1544 122 8e-23
seq442 122 8e-23
seq643 116 3e-21
seq835 105 6e-18
>seq428
Length=571
Score = 123 bits (136), Expect = 2e-23
Identities = 167/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567
|||||||||| | ||| | || | ||| | ||| ||||| || || ||||||||||
Sbjct 337 TTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGG 396
Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627
||||||| || | || || ||||||||||| || || ||||| |||||||| |||| ||
Sbjct 397 CCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAG 456
Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687
| | | || ||||| ||||| ||| | | | | | |||||||| || |
Sbjct 457 GGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGA 516
Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
|||| | ||||| ||||| || || | |||||||| || ||||||||| ||
Sbjct 517 CCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTTG 569
>seq1544
Length=892
Score = 122 bits (134), Expect = 8e-23
Identities = 147/196 (75%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || || |||||||| || | || | |||| ||||||||||||||||||||
Sbjct 188 CTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAA 247
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||||| |||||| |||| ||||| | |||||| ||| |||| || || | | ||
Sbjct 248 GATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCCTGGATC-TTAGCCTTAACGT 306
Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720
|| | | ||||| |||| || ||||| | || || |||||||| || | ||| |
Sbjct 307 TGTCAATGGTGTCTGAGCTC---TCGACCTCGAGGGTAATAGTTTTACCGGTAAGAGTCT 363
Query 35721 TCACAAATATCTGCAT 35736
||||||| ||||||||
Sbjct 364 TCACAAAGATCTGCAT 379
>seq442
Length=625744
Score = 122 bits (134), Expect = 8e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | || |||||| ||||||||||| |||| | ||| || |||| ||
Sbjct 417206 CACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 417265
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
||||||||||| ||||| || | ||||||||||| | || | || ||||||||||
Sbjct 417266 AAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 417325
Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
|||||| ||| | |||| | | ||||| ||| |||||||| | || ||||| |
Sbjct 417326 GATCTTGGACTTGA-CGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCT 417384
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || |||| || ||||| || ||||||||
Sbjct 417385 TGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415
Score = 111 bits (122), Expect = 1e-19
Identities = 146/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || | ||| |||||| ||||||||||| |||| | ||| || |||| ||
Sbjct 417435 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCG 417494
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|||||||| || || || || | ||||||||||| | |||| || |||||| ||| |
Sbjct 417495 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 417554
Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
||||| ||| | |||| | | |||||||| || |||||||| | ||||| || ||
Sbjct 417555 ATCTTGGACTTGA-CGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTT 417613
Query 35707 ACCCGTCAAAGTTTTCACAA 35726
|| || | ||| || ||||
Sbjct 417614 GCCAGTGAGAGTCTTGACAA 417633
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || | ||| ||||| || ||||||||||| | |||||| || | || ||
Sbjct 417720 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCCTCA 417779
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|||||||| || || || || | || |||||||| | || | || |||||| ||| |
Sbjct 417780 AGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 417839
Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707
||||| ||||| | | | | || ||| || |||||||| | ||||| || ||
Sbjct 417840 ATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 417899
Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| || | || || || || ||||||||
Sbjct 417900 CCAGTGAGGGTCTTGACGAAGATCTGCAT 417928
>seq643
Length=80414
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
|| |||||||| || |||||||| |||| | ||| || |||| || |||||||| ||
Sbjct 65264 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 65323
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
|| || |||| ||||||||||| | || | || |||||||||| |||||| |||
Sbjct 65324 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 65383
Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719
| | | | | |||||| || |||||||| | ||||| || |||||||| | ||
Sbjct 65384 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 65443
Query 35720 TTCACAAATATCTGCAT 35736
|| || || ||||||||
Sbjct 65444 TTGACGAAGATCTGCAT 65460
>seq835
Length=459924
Score = 105 bits (116), Expect = 6e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | ||| || |||| || |||||||| || || || |
Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||| | || | || |||||||||| |||||| ||| | | |
Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||||| || || ||||| | || || || |||||||||| || ||||| |
Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333
Query 35727 A 35727
|
Sbjct 159332 A 159332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450784786985120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |