Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq428 141 9e-29 seq442 136 4e-27 seq1544 132 5e-26 seq643 122 9e-23 seq835 107 2e-18 seq211 93.3 4e-14 >seq428 Length=571 Score = 141 bits (156), Expect = 9e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || || || |||||||| || || ||||| ||| | | |||| | || || Sbjct 357 ACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCA 416 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || |||||||||||||||||||| || || || |||||||| |||||| Sbjct 417 AGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGA 476 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||| || || ||||| || |||||||| Sbjct 477 ATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTC 536 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||||| ||||| |||||||| ||||||||| Sbjct 537 CCGGTTAGGGTTTTCACGAAAATCTGCATTTTG 569 >seq442 Length=625744 Score = 136 bits (150), Expect = 4e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 134474 CGCCGTTGCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAAT 134533 ||||| | || ||||| | ||| || | ||| | ||| || || || ||||| ||||| Sbjct 417176 CGCCGCTTACTGGCCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAAT 417235 Query 134534 GTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTG 134593 |||||||||| | |||| | ||| || ||||| || || ||||| || | |||||| Sbjct 417236 GTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTG 417295 Query 134594 CTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTC 134653 ||| ||||| || ||||| || || || || || || ||||| ||| | |||||| Sbjct 417296 CTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATTGTGTC 417355 Query 134654 GGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| || | ||||| || || ||||| | || || |||||||| ||||| Sbjct 417356 TGACGACTCCACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || || || ||||| ||||||||||||||| Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| |||||||| ||||| || || || | ||||||||| ||||| || Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGA 417536 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||| || ||||| Sbjct 417537 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACC 417596 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||||| || ||||| || || || | ||| || || Sbjct 417597 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGAC 417631 >seq1544 Length=892 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || || || || || |||||||| || ||||||||||| || Sbjct 609 CCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCA 668 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| ||||||||||| || || || |||| ||| ||||| || || || Sbjct 669 AGAGTACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGA 728 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| ||| | ||||| || || || Sbjct 729 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACC 788 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 |||||||| ||||| || ||||| | ||||||||||| |||||||| ||| Sbjct 789 TCGAGAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCATCTTG 839 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||||||| ||||| || || |||||||| || ||||||||||| ||||| | | Sbjct 390 AGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTT 449 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || |||||||| || || ||||| ||||| | ||||||||| || || || ||||| Sbjct 450 CCA-TCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTC 508 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || ||| | || || || || || ||||| || Sbjct 509 CTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACCTCGAGGGT 568 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| | || ||||| || || ||||| Sbjct 569 GATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| ||||| || || || ||||| || || ||||| || || Sbjct 153 CCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 212 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || ||||| || || ||||| ||||| | ||||||||| || || Sbjct 213 AGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGA 272 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || ||| | ||||| || || || Sbjct 273 ATACCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACC 332 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| ||||||||||| | ||| || || || || ||||| Sbjct 333 TCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 >seq643 Length=80414 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| |||||||| || ||| ||||| || |||||||||||| Sbjct 65234 CCTCCACGCAGGCGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 65293 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| || || || || |||| |||||||| ||||| || Sbjct 65294 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 65353 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 65354 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 65413 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || | || || ||||| || ||||| Sbjct 65414 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 65460 >seq835 Length=459924 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | |||| | ||| || ||||| ||||| || || | Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| ||||| || ||||| || || || || || || ||||| || Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || || || || || |||||||| ||||| || | || || |||| Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333 Query 134704 AA 134705 || Sbjct 159332 AA 159331 >seq211 Length=153984 Score = 93.3 bits (102), Expect = 4e-14 Identities = 273/420 (65%), Gaps = 3/420 (1%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || |||||| | ||||||| || || ||||| ||||| || |||| || | | Sbjct 109769 CAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTCATT 109710 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||||| || || || |||||||||||||| |||| | Sbjct 109709 GAGACATACAACTTGATGTCGAGCAAGTGCTTCACCCACGCTTCGCCCACATTGTTCAAC 109650 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || | | | || |||| || || ||| | | |||| |||||| Sbjct 109649 GCCGGTACTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAAGACTCT 109590 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 || || ||||| ||| |||| ||| ||||||| || || ||| | |||||| Sbjct 109589 ATTGAGGGCATCTACGACACTCTGAAGACCTGCGCCATGATATCAAAAATGGCCGGCGGC 109530 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGA 7863 || ||||| || || || | | || |||| || | ||||| |||||| || Sbjct 109529 ATTGGTCTAAATGTCCACCGCATCCGTGCCACTGGCTCCTACATCGCCGGCACCAATGGC 109470 Query 7864 AAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGAC 7923 | ||| |||| | || ||| | ||||| ||||| ||| | | || |||| ||| Sbjct 109469 ACCTCCAACGGTGTTACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCTATGTCGAC 109410 Query 7924 CAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGAC 7980 ||||| || |||||| || ||| ||||||||| | ||||| ||||| || ||| Sbjct 109409 CAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCATGCCGAC 109350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505388519461280