Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq456 123 3e-23 >seq456 Length=562 Score = 123 bits (136), Expect = 3e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 176302 CACCTGATGGAACTGAAACGTCCTTCCCATGTGAGGATGATCAGTATATCCTTGACGCTG 176361 |||| ||||||||| || || | |||| |||||| || || |||||| || Sbjct 246 CACCAGATGGAACTCAAGAGT---TTGAATGTCCAGATGATGTTTACATTCTTGACCATG 302 Query 176362 CTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGTTCATCTTGTG 176421 ||||||||| || | ||| || |||||| || | |||||| ||||||| || |||| Sbjct 303 CTGAAGAAGTTGGAATTGATCTCCCTTACTCATGCAGAGCTGGTTCTTGTTCTTCATGTG 362 Query 176422 CTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAGTCTTTCCTGGATGATGATC 176481 |||| ||| | | | ||| |||||||| |||| |||||||| |||||||| | Sbjct 363 CTGGTAAAGTTGTTGGGGGTGAAGTTGATCAATCTGATGGTTCTTTCCTTGATGATGACC 422 Query 176482 AAATTGAATCTGGTTTTATTCTGACTTGCGTATCTTATCCTA 176523 | |||||| ||||||| |||| ||||| || ||||||||| Sbjct 423 AGATTGAAGGTGGTTTTGTTCTTACTTGTGTTGCTTATCCTA 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605997752512320