Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1201 109 8e-19 >seq1201 Length=295393 Score = 109 bits (120), Expect = 8e-19 Identities = 363/560 (65%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || |||||||| | || | ||||| || || || || Sbjct 156498 GCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAG 156557 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||||||||| |||||||| || |||| || |||| || ||||| Sbjct 156558 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAA 156617 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-- 39793 |||||| || || || ||||| ||||| || | || || || || | | || ||| Sbjct 156618 GATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCG-AAGGTGGA-CTTTGTGTCC 156675 Query 39794 ---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| | ||||| ||||| ||||| | || || || || || || || Sbjct 156676 GTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCG 156735 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 || |||||||| | || || |||| || || || || | || || Sbjct 156736 TTGAAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAA 156795 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || || ||||| || ||| ||||| || ||||| || || | || || | Sbjct 156796 GTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGG 156855 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030 | || || || | | || | || ||| || ||||| || || || || |||| Sbjct 156856 ACCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCG 156915 Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC--GGGTG-TCAATTTATTC 40087 || || || || | | || || || || || ||||| | || || || ||| Sbjct 156916 GCGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTC 156975 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 ||||| | || ||| || || | ||| | || ||||| ||||| || || ||||| ||| Sbjct 156976 CAGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCAGAAAGAGGCCTCGGCC 157035 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | ||| || Sbjct 157036 TTCTTGTACATTTGCCAAAT 157055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895370932960