Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1201 109 8e-19
>seq1201
Length=295393
Score = 109 bits (120), Expect = 8e-19
Identities = 363/560 (65%), Gaps = 10/560 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||| ||||| || || |||||||| | || | ||||| || || || ||
Sbjct 156498 GCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAG 156557
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|| ||||| ||||||||||| |||||||| || |||| || |||| || |||||
Sbjct 156558 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAA 156617
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT-- 39793
|||||| || || || ||||| ||||| || | || || || || | | || |||
Sbjct 156618 GATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCG-AAGGTGGA-CTTTGTGTCC 156675
Query 39794 ---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850
||||| | ||||| ||||| ||||| | || || || || || || ||
Sbjct 156676 GTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCG 156735
Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910
|| |||||||| | || || |||| || || || || | || ||
Sbjct 156736 TTGAAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAA 156795
Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970
| || || || ||||| || ||| ||||| || ||||| || || | || || |
Sbjct 156796 GTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGG 156855
Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030
| || || || | | || | || ||| || ||||| || || || || ||||
Sbjct 156856 ACCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCG 156915
Query 40031 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC--GGGTG-TCAATTTATTC 40087
|| || || || | | || || || || || ||||| | || || || |||
Sbjct 156916 GCGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTC 156975
Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147
||||| | || ||| || || | ||| | || ||||| ||||| || || ||||| |||
Sbjct 156976 CAGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCAGAAAGAGGCCTCGGCC 157035
Query 40148 TTTTTGTACATGTTCCATAT 40167
|| |||||||| | ||| ||
Sbjct 157036 TTCTTGTACATTTGCCAAAT 157055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686895370932960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |