Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq442 98.7 8e-16 seq211 96.9 3e-15 seq1544 87.8 2e-12 >seq442 Length=625744 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||||| || | ||||| || || ||||| ||||||||| Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| |||||||| || || ||| | ||||||||||| || || || || Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGA 417536 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||||| || | | | || | |||||| | | || || Sbjct 417537 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACC 417596 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 || || || || | ||||| || ||||| || |||| Sbjct 417597 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAA 417633 >seq211 Length=153984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 335/521 (64%), Gaps = 9/521 (2%) Strand=Plus/Plus Query 131549 TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACAT 131608 ||||| || |||||||| | ||| || | | |||| | | | | | | || || Sbjct 109147 TCGTACTTCTCGTACAAGGCTTCGAATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCAC 109206 Query 131609 TCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCC 131668 ||| |||||||||| || | ||| | ||||||| || ||||||||||| || | ||| Sbjct 109207 TCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCA 109266 Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728 || | ||| | ||| || || || | || ||| || | || | || Sbjct 109267 GGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTG 109326 Query 131729 ttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCG 131788 | | ||||| || || | ||| ||||||||||| || | || | || | || Sbjct 109327 CGGAGGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCA 109386 Query 131789 CCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAAC 131845 || |||||| || || || | |||| || | |||||||| | ||||| | | Sbjct 109387 CCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGC 109446 Query 131846 ATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTG 131905 || || | |||||||| | | |||||||||| |||||| |||| |||| | | Sbjct 109447 ATAGGGGTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGG 109506 Query 131906 ATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTT 131965 || ||| || || || ||||| || ||| | ||| || || | ||||| | | Sbjct 109507 ATGCGGTGGACATTTAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTC 109566 Query 131966 AGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGAC 132025 ||||||| ||||| || || | ||| | |||||||| | |||||| || ||| Sbjct 109567 AGAGTGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGAC 109626 Query 132026 AACTGT---TGGTGAAATGTGCCGGCTGAAAACAATGTGGG 132063 | |||| ||| || || ||||| ||||||||||| Sbjct 109627 AGCTGTGCCTGGGGA---GTACCGGCGTTGAACAATGTGGG 109664 >seq1544 Length=892 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||| ||||| ||||| || | || | | ||| |||||||| || | |||||| | Sbjct 223 CGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCT 282 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 |||| |||||| || | | | || | ||||||| | || || || || || | Sbjct 283 TATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAA 342 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||| || || ||||| ||||||||||| |||||| Sbjct 343 TAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCATA 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424926300219168