Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq442 98.7 8e-16
seq211 96.9 3e-15
seq1544 87.8 2e-12
>seq442
Length=625744
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|||||||| | || | ||||| || | ||||| || || ||||| |||||||||
Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | | || |||| |||||||| || || ||| | ||||||||||| || || || ||
Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGA 417536
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| ||||| ||||||| || | | | || | |||||| | | || ||
Sbjct 417537 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACC 417596
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237
|| || || || | ||||| || ||||| || ||||
Sbjct 417597 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAA 417633
>seq211
Length=153984
Score = 96.9 bits (106), Expect = 3e-15
Identities = 335/521 (64%), Gaps = 9/521 (2%)
Strand=Plus/Plus
Query 131549 TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACAT 131608
||||| || |||||||| | ||| || | | |||| | | | | | | || ||
Sbjct 109147 TCGTACTTCTCGTACAAGGCTTCGAATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCAC 109206
Query 131609 TCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCC 131668
||| |||||||||| || | ||| | ||||||| || ||||||||||| || | |||
Sbjct 109207 TCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCA 109266
Query 131669 GGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt 131728
|| | ||| | ||| || || || | || ||| || | || | ||
Sbjct 109267 GGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTG 109326
Query 131729 ttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCG 131788
| | ||||| || || | ||| ||||||||||| || | || | || | ||
Sbjct 109327 CGGAGGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCA 109386
Query 131789 CCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAAC 131845
|| |||||| || || || | |||| || | |||||||| | ||||| | |
Sbjct 109387 CCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGC 109446
Query 131846 ATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTG 131905
|| || | |||||||| | | |||||||||| |||||| |||| |||| | |
Sbjct 109447 ATAGGGGTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGG 109506
Query 131906 ATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTT 131965
|| ||| || || || ||||| || ||| | ||| || || | ||||| | |
Sbjct 109507 ATGCGGTGGACATTTAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTC 109566
Query 131966 AGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGAC 132025
||||||| ||||| || || | ||| | |||||||| | |||||| || |||
Sbjct 109567 AGAGTGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGAC 109626
Query 132026 AACTGT---TGGTGAAATGTGCCGGCTGAAAACAATGTGGG 132063
| |||| ||| || || ||||| |||||||||||
Sbjct 109627 AGCTGTGCCTGGGGA---GTACCGGCGTTGAACAATGTGGG 109664
>seq1544
Length=892
Score = 87.8 bits (96), Expect = 2e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150
||||||| ||||| ||||| || | || | | ||| |||||||| || | |||||| |
Sbjct 223 CGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCT 282
Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210
|||| |||||| || | | | || | ||||||| | || || || || || |
Sbjct 283 TATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAA 342
Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
||| ||| || || ||||| ||||||||||| ||||||
Sbjct 343 TAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCATA 380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424926300219168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |