Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1201 136 1e-26 seq211 87.8 6e-12 >seq1201 Length=295393 Score = 136 bits (150), Expect = 1e-26 Identities = 361/535 (67%), Gaps = 25/535 (5%) Strand=Plus/Minus Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408 |||||||||||| | |||||||| | ||| |||||| ||| | ||| | | |||| Sbjct 157010 GAGGAGATTGATTTGTCCAAGGATCTCCACGACTGGAAC-AACAAG-ATCAA-CGATGAT 156954 Query 443409 CGCGATTTCTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 | | ||||| | ||| | |||||||| || | |||||| |||||| | Sbjct 156953 GAGAAGTACTTCATCTCTCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAAT 156894 Query 443466 GAGAATCTGGTGACGCGTTTCTA---CGAAATGGTAGTGTACACCGAGGCCCGCTACTTC 443522 ||||| ||||| |||||||| |||| | || | ||||||| |||| |||| Sbjct 156893 GAGAACCTGGTTGAGCGTTTCTCTGGCGAAGTCCAGGT---CCCCGAGGCGCGCTGCTTC 156837 Query 443523 TACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAG 443582 |||| ||||| | ||||||||||||||| ||||| ||| | | ||| | Sbjct 156836 TACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACTTACTCCCTTCTCATCGAC 156777 Query 443583 ACACTA-ATTCCGAACGAAGACGAACAGCGGTCC-ATCTTCTCATCGT--TCATGACCAC 443638 || ||| ||| || || | ||||| || |||| ||| || || |||| Sbjct 156776 AC-CTACATT---AAGGAGCCTGCCCAGCGTACCTATCTCTTCAACGCCATCGACACCAT 156721 Query 443639 GCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTC--GAACGAGAAAATCTC 443696 || ||||| | | ||| || |||||| | ||| || | || | ||| || | Sbjct 156720 CCCCTGCATCCGTAAGAAGGCTGACTGGGCCTTGCGCTGGATCACGGAC-ACAAAGTC-C 156663 Query 443697 AGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGC 443756 | ||||| | |||| || || || ||||| | ||||| || | || || ||||| || Sbjct 156662 ACCTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT-GC 156604 Query 443757 TTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAA 443816 ||| ||||||||||||||| | || |||||||| || |||| |||||| ||||| || Sbjct 156603 TTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTCTCCAA 156544 Query 443817 CGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 ||| || ||| || || |||||| | || |||||| ||||| ||||| ||| Sbjct 156543 CGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTTCTGTAC 156489 >seq211 Length=153984 Score = 87.8 bits (96), Expect = 6e-12 Identities = 210/312 (67%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| |||| || ||||||||| || ||||| ||||| || || ||| ||| ||| Sbjct 109451 CCTATGCTCCGCGTCTTCAACAACACCGCCCGCTATGTCGACCAGGGTGGCAACAAGCGC 109392 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || || || || |||||||||| ||||| ||||| |||||| | |||||| Sbjct 109391 CCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCATGCCGACGTCTTCGAGTTTTTGGAC 109332 Query 255101 CTGTCCGACAAGACC---GGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTC 255157 || ||| ||||| | |||| |||||| | ||||| ||| | | | ||| | Sbjct 109331 CT--CCG-CAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCCCTT 109275 Query 255158 TGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATGTG 255216 ||| | ||||| || ||| || ||||| | || | ||| |||| || ||||| Sbjct 109274 TGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAAGAACGGTGAC-TGGACACTGATGTG 109216 Query 255217 TCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCT 255276 ||||||| | || ||||| | ||||| | || || || || ||| |||| Sbjct 109215 TCCCAACGAGTGCCCGGGTCTTGCCGACTGCTATGGCGAGGAATTCGAAGCCTTGTACGA 109156 Query 255277 GGAGTACGAGCG 255288 | |||||||||| Sbjct 109155 GAAGTACGAGCG 109144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588304171731980