Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq211 161 1e-34
seq1201 134 2e-26
>seq211
Length=153984
Score = 161 bits (178), Expect = 1e-34
Identities = 975/1527 (64%), Gaps = 45/1527 (3%)
Strand=Plus/Plus
Query 110647 GAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706
|||||| |||| ||| |||||||| ||||||||| || | | | | | |
Sbjct 108333 GAGGTCCTTGAGGAGCCAAGGGTTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTG 108392
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||||||||| | ||||| || ||||||||||| || || |||| || || | ||
Sbjct 108393 GTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACT 108452
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826
||| |||||||| || || | | | |||||||| | ||| | || |||||| ||||
Sbjct 108453 GGCGGTTGGCATGGGGGCGACGAGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTC 108512
Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885
||||||| ||||||||| || | | || || || | ||||||||||| | ||||
Sbjct 108513 CTTGAGAGAATCCCAGTCCCAGAGGTCGGAGGGCTTGAC-TCCCCACATGTCATATTGAA 108571
Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945
| || || || || | || || || ||| | | ||||| || | | | || |
Sbjct 108572 GGACGCCCTGTGAGACTGGGGAGCCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTA 108631
Query 110946 ATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004
| ||| | | || | ||||| || ||||| || ||||| ||||
Sbjct 108632 GCTGCACTGACATGGTG-AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGT 108690
Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACC 111063
|| || ||| || || || | | || ||| | | ||| |||| || |||||
Sbjct 108691 TCACGAGCCTCAGGCGACTCGAACG-GCAGTCGCAAAGCCAAGAATGCATCAGCAAGACC 108749
Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 111120
|| ||||| | ||||| || | || ||||| || || | ||| || ||| ||
Sbjct 108750 CTGGACACCGAGGCCAATGGGCCGATGGCGCATGTTG--CTGTTGCG-AGCCTCCGGGAC 108806
Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180
|||||| || ||| |||| | || || || ||||| || |||| ||
Sbjct 108807 GGGATAGTGGTTGACGTCGATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATC 108866
Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA-TTGACATACTTTGGAAGGGCGA 111239
|| || || | | ||| | | | ||| || | || || | || || || |
Sbjct 108867 GTGTAGCTTCTGGAAGTCATAGATTCC-GTCGCTGTAGTTCACGAAAGAAGGGAGAGCAA 108925
Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299
|| ||||| ||||| || || ||| || | | |||||| | ||||| || |
Sbjct 108926 GGGACGCCAAGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGC 108985
Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG-CACGCA 111358
| | |||||| || ||| || || | |||||| ||||| ||||| |||| || | |
Sbjct 108986 AAAGGTTGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-A 109044
Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA- 111417
||||||||||||||| | || | || ||||| ||||| | | |||||| || | |||
Sbjct 109045 TCCTTGTAGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAG 109104
Query 111418 AACATCGGCGGCTGGTACAATGGCGTT-GGCCCGTCCCTCCGC-CTCGTACTTTGTGTAG 111475
| | || | ||| | || | | || | ||| | ||| ||| ||||||||| |||
Sbjct 109105 AGCTTCTG-GGC--CTTCATGGTCTTTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTAC 109161
Query 111476 AGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534
| |||||| || ||||| ||| || ||||| ||||| || || || ||||| |
Sbjct 109162 AAGGCTTCGAATTCCTC-GCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACAT 109220
Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG-- 111592
|| | ||| | ||| | ||| || ||||||||||| || || || ||||| |||
Sbjct 109221 CAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGC 109280
Query 111593 GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651
|| |||| || || | ||| || |||| || | || ||||| || | || |
Sbjct 109281 GAGGAAA--AGGTCACGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAA 109337
Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTC 111707
||||| | || || || ||||| ||||| || |||| || | | || | |
Sbjct 109338 AAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTT 109397
Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767
| | ||| | || | |||||||| || ||| ||| || ||||| ||||| || |||
Sbjct 109398 GTTG-CCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAA 109456
Query 111768 TACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATG 111825
||| | || ||||| || || ||| || ||| | |||| | | ||
Sbjct 109457 CACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAG--CCAGTGGCACGGATGCGGTG 109514
Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885
|| | | ||||| || || ||| ||||| || || || | | ||||| |
Sbjct 109515 GACATTTAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTC 109574
Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945
||||| || | || ||||| ||||| || ||| || ||||| |||| ||| |
Sbjct 109575 GTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGC 109634
Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTG--GGA 112002
|| ||||| || ||||| | || || | ||||| |||| || |||| ||
Sbjct 109635 CTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCA---CTTGCTCGA 109691
Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062
|||| || ||||||||| | ||| |||| || || || |||||| | || ||
Sbjct 109692 CATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATGCCAACGGCAAC 109751
Query 112063 CCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCT 112122
||||||| ||||| |||||| | || | ||||||| ||| ||||||||
Sbjct 109752 GCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAGATAGGA 109811
Query 112123 CTTCTCAAGGGTTTTGAGACCAAAGTA 112149
|||| | ||| || | || |||||
Sbjct 109812 TCTCTCCAAGGTCTTAAAGCCGAAGTA 109838
>seq1201
Length=295393
Score = 134 bits (148), Expect = 2e-26
Identities = 351/527 (67%), Gaps = 19/527 (4%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || ||||||||||||||| ||||| || || || || |||||| ||||||
Sbjct 156501 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACC 156560
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777
||||||||||| |||||||| | ||| | || | | ||| | ||| |||||||||
Sbjct 156561 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 156620
Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834
||||| || ||||| |||| ||||| | |||||||| | ||||||| ||
Sbjct 156621 GCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTG---GACTTTGTGTCCGT 156677
Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TT 122893
| ||| || ||||| | |||||||| || || || | || | |||||| ||
Sbjct 156678 GATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTT 156737
Query 122894 CAA---ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAAT 122950
|| ||| | | || ||| ||||||||||| |||| || | || |
Sbjct 156738 GAAGAGATAGGTAC-GCTGGGCAG---GCTCCTTAATGTAGGTGTCGATGAGAAGGGAGT 156793
Query 122951 ATGTTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCG 123009
| || ||| |||| | | ||| ||| | || | ||||||| ||||||| |||
Sbjct 156794 AAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAGCGCGCCTCG 156852
Query 123010 CTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 123069
| ||| || || | | ||| | | | |||||| || || || |||||
Sbjct 156853 GGGACCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAA 156912
Query 123070 CCAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCAT---TCAGGGTC 123126
| || ||||| || || |||| ||||| | ||| |||| || | || | |
Sbjct 156913 GCGGCGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTG 156972
Query 123127 TTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
|||||||||| ||||| ||||||||||||| || || ||||||||
Sbjct 156973 TTCCAGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCA 157019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628019721974400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |