Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq211 161 1e-34 seq1201 134 2e-26 >seq211 Length=153984 Score = 161 bits (178), Expect = 1e-34 Identities = 975/1527 (64%), Gaps = 45/1527 (3%) Strand=Plus/Plus Query 110647 GAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAG 110706 |||||| |||| ||| |||||||| ||||||||| || | | | | | | Sbjct 108333 GAGGTCCTTGAGGAGCCAAGGGTTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTG 108392 Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||| || ||||||||||| || || |||| || || | || Sbjct 108393 GTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACT 108452 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| |||||||| || || | | | |||||||| | ||| | || |||||| |||| Sbjct 108453 GGCGGTTGGCATGGGGGCGACGAGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTC 108512 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 ||||||| ||||||||| || | | || || || | ||||||||||| | |||| Sbjct 108513 CTTGAGAGAATCCCAGTCCCAGAGGTCGGAGGGCTTGAC-TCCCCACATGTCATATTGAA 108571 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | || || || || | || || || ||| | | ||||| || | | | || | Sbjct 108572 GGACGCCCTGTGAGACTGGGGAGCCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTA 108631 Query 110946 ATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | ||| | | || | ||||| || ||||| || ||||| |||| Sbjct 108632 GCTGCACTGACATGGTG-AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGT 108690 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACC 111063 || || ||| || || || | | || ||| | | ||| |||| || ||||| Sbjct 108691 TCACGAGCCTCAGGCGACTCGAACG-GCAGTCGCAAAGCCAAGAATGCATCAGCAAGACC 108749 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 111120 || ||||| | ||||| || | || ||||| || || | ||| || ||| || Sbjct 108750 CTGGACACCGAGGCCAATGGGCCGATGGCGCATGTTG--CTGTTGCG-AGCCTCCGGGAC 108806 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| || ||| |||| | || || || ||||| || |||| || Sbjct 108807 GGGATAGTGGTTGACGTCGATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATC 108866 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA-TTGACATACTTTGGAAGGGCGA 111239 || || || | | ||| | | | ||| || | || || | || || || | Sbjct 108867 GTGTAGCTTCTGGAAGTCATAGATTCC-GTCGCTGTAGTTCACGAAAGAAGGGAGAGCAA 108925 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 || ||||| ||||| || || ||| || | | |||||| | ||||| || | Sbjct 108926 GGGACGCCAAGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGC 108985 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG-CACGCA 111358 | | |||||| || ||| || || | |||||| ||||| ||||| |||| || | | Sbjct 108986 AAAGGTTGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-A 109044 Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA- 111417 ||||||||||||||| | || | || ||||| ||||| | | |||||| || | ||| Sbjct 109045 TCCTTGTAGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAG 109104 Query 111418 AACATCGGCGGCTGGTACAATGGCGTT-GGCCCGTCCCTCCGC-CTCGTACTTTGTGTAG 111475 | | || | ||| | || | | || | ||| | ||| ||| ||||||||| ||| Sbjct 109105 AGCTTCTG-GGC--CTTCATGGTCTTTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTAC 109161 Query 111476 AGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 | |||||| || ||||| ||| || ||||| ||||| || || || ||||| | Sbjct 109162 AAGGCTTCGAATTCCTC-GCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACAT 109220 Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG-- 111592 || | ||| | ||| | ||| || ||||||||||| || || || ||||| ||| Sbjct 109221 CAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGC 109280 Query 111593 GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 || |||| || || | ||| || |||| || | || ||||| || | || | Sbjct 109281 GAGGAAA--AGGTCACGGGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAA 109337 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTC 111707 ||||| | || || || ||||| ||||| || |||| || | | || | | Sbjct 109338 AAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTT 109397 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | | ||| | || | |||||||| || ||| ||| || ||||| ||||| || ||| Sbjct 109398 GTTG-CCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAA 109456 Query 111768 TACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATG 111825 ||| | || ||||| || || ||| || ||| | |||| | | || Sbjct 109457 CACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAG--CCAGTGGCACGGATGCGGTG 109514 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 || | | ||||| || || ||| ||||| || || || | | ||||| | Sbjct 109515 GACATTTAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTC 109574 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||| || | || ||||| ||||| || ||| || ||||| |||| ||| | Sbjct 109575 GTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGC 109634 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTG--GGA 112002 || ||||| || ||||| | || || | ||||| |||| || |||| || Sbjct 109635 CTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCA---CTTGCTCGA 109691 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 |||| || ||||||||| | ||| |||| || || || |||||| | || || Sbjct 109692 CATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATGCCAACGGCAAC 109751 Query 112063 CCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCT 112122 ||||||| ||||| |||||| | || | ||||||| ||| |||||||| Sbjct 109752 GCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAGATAGGA 109811 Query 112123 CTTCTCAAGGGTTTTGAGACCAAAGTA 112149 |||| | ||| || | || ||||| Sbjct 109812 TCTCTCCAAGGTCTTAAAGCCGAAGTA 109838 >seq1201 Length=295393 Score = 134 bits (148), Expect = 2e-26 Identities = 351/527 (67%), Gaps = 19/527 (4%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||||||||||||||| ||||| || || || || |||||| |||||| Sbjct 156501 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACC 156560 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | ||| | ||| ||||||||| Sbjct 156561 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 156620 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC--- 122834 ||||| || ||||| |||| ||||| | |||||||| | ||||||| || Sbjct 156621 GCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTG---GACTTTGTGTCCGT 156677 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TT 122893 | ||| || ||||| | |||||||| || || || | || | |||||| || Sbjct 156678 GATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTT 156737 Query 122894 CAA---ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAAT 122950 || ||| | | || ||| ||||||||||| |||| || | || | Sbjct 156738 GAAGAGATAGGTAC-GCTGGGCAG---GCTCCTTAATGTAGGTGTCGATGAGAAGGGAGT 156793 Query 122951 ATGTTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCG 123009 | || ||| |||| | | ||| ||| | || | ||||||| ||||||| ||| Sbjct 156794 AAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAGCGCGCCTCG 156852 Query 123010 CTTATCTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 123069 | ||| || || | | ||| | | | |||||| || || || ||||| Sbjct 156853 GGGACCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAA 156912 Query 123070 CCAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCAT---TCAGGGTC 123126 | || ||||| || || |||| ||||| | ||| |||| || | || | | Sbjct 156913 GCGGCGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTG 156972 Query 123127 TTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 |||||||||| ||||| ||||||||||||| || || |||||||| Sbjct 156973 TTCCAGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCA 157019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019721974400