Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq211 235 7e-57
seq1201 123 3e-23
seq790 82.4 9e-11
>seq211
Length=153984
Score = 235 bits (260), Expect = 7e-57
Identities = 904/1393 (65%), Gaps = 65/1393 (5%)
Strand=Plus/Plus
Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202
|||||||| ||||||||| || | | ||| | | | ||||| |||| ||||| |||
Sbjct 108355 TTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGC 108414
Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262
|||||||| || ||||| |||| || |||| || ||| || |||||||| || | |
Sbjct 108415 TCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACG 108474
Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC---- 118318
|| | ||||||||| | ||| | | | | || |||||||||||| ||||||||
Sbjct 108475 AGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCAG 108534
Query 118319 --GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376
|| | | || ||| |||| |||||| ||| | || |||| || || || ||
Sbjct 108535 AGGTCGGAGGGC-TTGACTCC-----CCACATGTCATATTGAAGGACGCCCTGTGAGACT 108588
Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT-- 118434
|| || || ||| | | | ||| | |||||| ||| || | | | || | |
Sbjct 108589 GGGGAGCCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTA--GCTGCACTGACATGG 108646
Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494
||| || ||||| || || || || || || |||| | | ||||| |
Sbjct 108647 TGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGTTCACGAGCCTCAGGCG 108706
Query 118495 AATCAAACGCGAGTCGGCACAAA---ATAAATACATCCGCGAGACCTTGGACACCGAGGC 118551
| || |||| ||||| |||| | ||| |||| || ||||| |||||||||||||
Sbjct 108707 ACTCGAACGGCAGTCG---CAAAGCCAAGAATGCATCAGCAAGACCCTGGACACCGAGGC 108763
Query 118552 CAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCC 118608
|||| || ||||| | ||| || || ||||| |||| |||||||| ||
Sbjct 108764 CAATGGGCCGATGGCGCATGTTGCTGTTGCGAGC---CTCCGGGACGGGATAGTGGTTGA 108820
Query 118609 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 118668
||||| | |||||| || || ||||||| |||| || || ||||| | |
Sbjct 108821 CGTCGATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATCGTGTAGCTTCTGGA 108880
Query 118669 AATCAAAACTGCGAGTCTCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 118727
| ||| | | | ||| || | || || | ||| || || | ||||||| ||
Sbjct 108881 AGTCATAGATTC-CGTCGCTGTAGTTCACGAAAGAAGGGAGAGCAAGGGACGCCAAGTTG 108939
Query 118728 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTC 118787
|| || | | ||| || | | |||||| || ||||||||||| | ||| || ||
Sbjct 108940 CAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAAAGGTTGGAGCTT 108999
Query 118788 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT-ACACGCATCCTTGTAAAGCAT 118846
||||||||| | ||||| || || ||| ||| || | ||||||||| |||||
Sbjct 109000 CGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATCCTTGTAGAGCAT 109058
Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTG 118905
| | || | || ||||| || |||| || |||||| || | ||||| | || | ||
Sbjct 109059 GAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGAGCTTCTG-GGCCT 109117
Query 118906 GCACAGTGGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTGTGTAGAGGGCTTCAA 118959
|| ||| || ||| |||| |||| ||||||||| ||| | |||||| |
Sbjct 109118 TCA---TGGTCTT---TCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGA 109171
Query 118960 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 119019
| || || || | || | || || || || | || || | || | ||| |
Sbjct 109172 ATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCAGTGTCCAGT 109231
Query 119020 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGAT 119079
||| || ||| || |||||||||||||| || |||||||| || || ||| || |
Sbjct 109232 CACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGT 109291
Query 119080 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 119139
| || || | || || | || || || || | |||||||| || | || |
Sbjct 109292 CACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGT 109351
Query 119140 CCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTACGACGACCAGCCT 119193
| || ||||| || || ||||| | || | | || | ||| | | ||| |||
Sbjct 109352 CGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTT--GTTG-CCACCCT 109408
Query 119194 GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATT 119253
||| ||||| | || ||| ||| || || || ||||| || | | ||| | |||
Sbjct 109409 GGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGAGG 109468
Query 119254 GGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACC 119311
|||||| || || ||| || ||| | | |||| | || ||||| | | |||
Sbjct 109469 TGCCATTGGTGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACATTTAGACC 109526
Query 119312 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATC 119371
||| || || ||| ||||| || ||||| | | ||| || ||||||| || ||
Sbjct 109527 AATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTC 109586
Query 119372 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACC 119431
|| ||||| |||| | ||| ||| |||||| ||||| || | | ||| |||||
Sbjct 109587 AATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACC 109646
Query 119432 AGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCTTG--GGACATCTTGTCGTA 119488
|||||||| | || || | |||||| |||| || |||| |||||| || |||
Sbjct 109647 GGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCA---CTTGCTCGACATCAAGTTGTA 109703
Query 119489 GGTCTCCAAGACG 119501
||||| | ||||
Sbjct 109704 TGTCTCAATGACG 109716
>seq1201
Length=295393
Score = 123 bits (136), Expect = 3e-23
Identities = 344/523 (66%), Gaps = 11/523 (2%)
Strand=Plus/Plus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || |||||||||||| |||||||||||||| || || |||||| |||||
Sbjct 156501 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACC 156560
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134
||||||||||| |||||||| | |||||| || | || | || |||||||||
Sbjct 156561 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 156620
Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC--- 130191
||||| || || || |||| ||| |||| || |||| ||||||||| ||
Sbjct 156621 GCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGG---TGGACTTTGTGTCCGT 156677
Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251
| ||| || ||||| | ||||| || ||| || |||| ||| | ||| || |
Sbjct 156678 GATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTT 156737
Query 130252 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 130311
||||| | | | | || || || ||||| | || ||||| || || ||
Sbjct 156738 GAAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGT 156797
Query 130312 TTCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 130370
||| || | | | ||| || | ||| | ||||||| ||||||| ||| |
Sbjct 156798 CTCGGAGTGAATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGA 156856
Query 130371 TCTGTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 130430
||| || || | | ||| | | | |||||| || || || ||||| | |
Sbjct 156857 CCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGG 156916
Query 130431 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGT---TCAGGGTCTTCC 130487
| || || || || || | ||||| | || |||| |||| || | | ||||
Sbjct 156917 CGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCC 156976
Query 130488 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
|||||| |||||||| || | ||| | |||||| ||||||||
Sbjct 156977 AGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCA 157019
>seq790
Length=831417
Score = 82.4 bits (90), Expect = 9e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 180882 CTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGT 180941
||| |||||||| |||||||| ||||| || | |||||| | ||| ||||||||||
Sbjct 692702 CTTCGCACCGTAACCATTGCGACCACCCACTGTCTTCTTCTCCTCGTCGTCGTAGTTTGA 692761
Query 180942 ACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTGCAT 181001
|| ||| ||||||||||| ||| | | || || | |||| | ||| ||| |||| ||
Sbjct 692762 ACCCGTCAGGAGGTGACCGAAGATCATCTCCGGGATGTAAATCTTCTCTTTTCCGTGGAT 692821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618423109591840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |