Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq211 235 7e-57 seq1201 123 3e-23 seq790 82.4 9e-11 >seq211 Length=153984 Score = 235 bits (260), Expect = 7e-57 Identities = 904/1393 (65%), Gaps = 65/1393 (5%) Strand=Plus/Plus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 |||||||| ||||||||| || | | ||| | | | ||||| |||| ||||| ||| Sbjct 108355 TTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGC 108414 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 |||||||| || ||||| |||| || |||| || ||| || |||||||| || | | Sbjct 108415 TCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACG 108474 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC---- 118318 || | ||||||||| | ||| | | | | || |||||||||||| |||||||| Sbjct 108475 AGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCAG 108534 Query 118319 --GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCT 118376 || | | || ||| |||| |||||| ||| | || |||| || || || || Sbjct 108535 AGGTCGGAGGGC-TTGACTCC-----CCACATGTCATATTGAAGGACGCCCTGTGAGACT 108588 Query 118377 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT-- 118434 || || || ||| | | | ||| | |||||| ||| || | | | || | | Sbjct 108589 GGGGAGCCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTA--GCTGCACTGACATGG 108646 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494 ||| || ||||| || || || || || || |||| | | ||||| | Sbjct 108647 TGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGTTCACGAGCCTCAGGCG 108706 Query 118495 AATCAAACGCGAGTCGGCACAAA---ATAAATACATCCGCGAGACCTTGGACACCGAGGC 118551 | || |||| ||||| |||| | ||| |||| || ||||| ||||||||||||| Sbjct 108707 ACTCGAACGGCAGTCG---CAAAGCCAAGAATGCATCAGCAAGACCCTGGACACCGAGGC 108763 Query 118552 CAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCC 118608 |||| || ||||| | ||| || || ||||| |||| |||||||| || Sbjct 108764 CAATGGGCCGATGGCGCATGTTGCTGTTGCGAGC---CTCCGGGACGGGATAGTGGTTGA 108820 Query 118609 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 118668 ||||| | |||||| || || ||||||| |||| || || ||||| | | Sbjct 108821 CGTCGATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATCGTGTAGCTTCTGGA 108880 Query 118669 AATCAAAACTGCGAGTCTCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 118727 | ||| | | | ||| || | || || | ||| || || | ||||||| || Sbjct 108881 AGTCATAGATTC-CGTCGCTGTAGTTCACGAAAGAAGGGAGAGCAAGGGACGCCAAGTTG 108939 Query 118728 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTC 118787 || || | | ||| || | | |||||| || ||||||||||| | ||| || || Sbjct 108940 CAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAAAGGTTGGAGCTT 108999 Query 118788 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT-ACACGCATCCTTGTAAAGCAT 118846 ||||||||| | ||||| || || ||| ||| || | ||||||||| ||||| Sbjct 109000 CGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATCCTTGTAGAGCAT 109058 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTG 118905 | | || | || ||||| || |||| || |||||| || | ||||| | || | || Sbjct 109059 GAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGAGCTTCTG-GGCCT 109117 Query 118906 GCACAGTGGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTGTGTAGAGGGCTTCAA 118959 || ||| || ||| |||| |||| ||||||||| ||| | |||||| | Sbjct 109118 TCA---TGGTCTT---TCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGA 109171 Query 118960 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 119019 | || || || | || | || || || || | || || | || | ||| | Sbjct 109172 ATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCAGTGTCCAGT 109231 Query 119020 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGAT 119079 ||| || ||| || |||||||||||||| || |||||||| || || ||| || | Sbjct 109232 CACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGT 109291 Query 119080 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 119139 | || || | || || | || || || || | |||||||| || | || | Sbjct 109292 CACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGT 109351 Query 119140 CCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTACGACGACCAGCCT 119193 | || ||||| || || ||||| | || | | || | ||| | | ||| ||| Sbjct 109352 CGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTT--GTTG-CCACCCT 109408 Query 119194 GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATT 119253 ||| ||||| | || ||| ||| || || || ||||| || | | ||| | ||| Sbjct 109409 GGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGAGG 109468 Query 119254 GGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACC 119311 |||||| || || ||| || ||| | | |||| | || ||||| | | ||| Sbjct 109469 TGCCATTGGTGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACATTTAGACC 109526 Query 119312 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATC 119371 ||| || || ||| ||||| || ||||| | | ||| || ||||||| || || Sbjct 109527 AATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTC 109586 Query 119372 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACC 119431 || ||||| |||| | ||| ||| |||||| ||||| || | | ||| ||||| Sbjct 109587 AATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACC 109646 Query 119432 AGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA-CATACCTTG--GGACATCTTGTCGTA 119488 |||||||| | || || | |||||| |||| || |||| |||||| || ||| Sbjct 109647 GGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCA---CTTGCTCGACATCAAGTTGTA 109703 Query 119489 GGTCTCCAAGACG 119501 ||||| | |||| Sbjct 109704 TGTCTCAATGACG 109716 >seq1201 Length=295393 Score = 123 bits (136), Expect = 3e-23 Identities = 344/523 (66%), Gaps = 11/523 (2%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||||||||| |||||||||||||| || || |||||| ||||| Sbjct 156501 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACC 156560 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| || | || | || ||||||||| Sbjct 156561 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 156620 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC--- 130191 ||||| || || || |||| ||| |||| || |||| ||||||||| || Sbjct 156621 GCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGG---TGGACTTTGTGTCCGT 156677 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 | ||| || ||||| | ||||| || ||| || |||| ||| | ||| || | Sbjct 156678 GATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTT 156737 Query 130252 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 130311 ||||| | | | | || || || ||||| | || ||||| || || || Sbjct 156738 GAAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGT 156797 Query 130312 TTCGCCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTA 130370 ||| || | | | ||| || | ||| | ||||||| ||||||| ||| | Sbjct 156798 CTCGGAGTGAATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGA 156856 Query 130371 TCTGTACCTCATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAG 130430 ||| || || | | ||| | | | |||||| || || || ||||| | | Sbjct 156857 CCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGG 156916 Query 130431 CAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGT---TCAGGGTCTTCC 130487 | || || || || || | ||||| | || |||| |||| || | | |||| Sbjct 156917 CGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCC 156976 Query 130488 AGTCGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| |||||||| || | ||| | |||||| |||||||| Sbjct 156977 AGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCA 157019 >seq790 Length=831417 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 180882 CTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGT 180941 ||| |||||||| |||||||| ||||| || | |||||| | ||| |||||||||| Sbjct 692702 CTTCGCACCGTAACCATTGCGACCACCCACTGTCTTCTTCTCCTCGTCGTCGTAGTTTGA 692761 Query 180942 ACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTGCAT 181001 || ||| ||||||||||| ||| | | || || | |||| | ||| ||| |||| || Sbjct 692762 ACCCGTCAGGAGGTGACCGAAGATCATCTCCGGGATGTAAATCTTCTCTTTTCCGTGGAT 692821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423109591840