Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq211 192 7e-44 seq1201 127 2e-24 seq2 84.2 3e-11 >seq211 Length=153984 Score = 192 bits (212), Expect = 7e-44 Identities = 919/1437 (64%), Gaps = 39/1437 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| |||||||||| ||| | || || || || || |||| ||| Sbjct 109772 CCACAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTC 109713 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATG-TTCATTCACGCAACACCAACCCTC 104338 | ||||||||| || |||||| |||| || |||| ||||| | || || | Sbjct 109712 ATTGAGACATACAACTTGATGTCGAGCAAG---TGCTTCACCCACGCTTCGCCCACATTG 109656 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || ||||| || | || |||| ||||| || ||| || ||||| Sbjct 109655 TTCAACGCCGGTACTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAA 109596 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||||| || | || ||||| | ||||| | | || || || ||||| ||| Sbjct 109595 GACTCTATTGAGGGCATCTACGACACTCTGAAGACCTGCGCCATGATATCAAAAATGGCC 109536 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 104516 || || ||||| | | |||| | | |||| | ||| || ||| || | Sbjct 109535 GGCGGCATTGGTCTAAATGTCCACCGCATCCGTGCCACTGG--CTCCTACATCGCCGGCA 109478 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | ||||| || | ||| ||| || ||||| ||||| || ||| ||| || |||| Sbjct 109477 CCAATGGCACCTCCAACGGTGTTACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCT 109418 Query 104577 ATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGG 104632 |||| | || | ||| | | | | || | | || |||| || ||||| ||| Sbjct 109417 ATGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGG 109359 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 || || || || | ||||| | || | || ||||| || | ||||||| || Sbjct 109358 CATGCCGACGTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGT 109299 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 ||| || || ||| ||| || ||||| || ||||||||||||||| |||| ||| || Sbjct 109298 GCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAAG 109239 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811 | || | ||| | || | ||||| || || || ||||| |||| ||| ||| Sbjct 109238 AACGGTGACTGGACACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGACTGCTATGGC 109179 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGC 104865 ||||| || |||||| | ||| ||||||||| |||| | ||||| ||| Sbjct 109178 -GAGGAATTCGAAGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGAAAGACCAT 109120 Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 || || |||| || | ||| | || |||||| || | || || ||||| || | Sbjct 109119 GAAGGC-CCAGAAGC-----TCTGGTATGCCATTCTCGAGGCCCAGACTGAGACCGGCAA 109066 Query 104926 ACCATACATGCTTTACAAAGACGCCTGT-AACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || | |||||| ||||| || | || |||| ||||| || || |||||| | || Sbjct 109065 CCCTTTCATGCTCTACAAGGAT-CATGCCAACCGCAAGAGCAACCAGAAGAATCTCGGCA 109007 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 || || ||||| || || || |||||| | || | | | | || ||| | Sbjct 109006 CCATTCGAAGCTCCAACCTTTGCACGGAAATCATTGAGTACTCGGCCCCTGACGAGGTCG 108947 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACA 105103 | || || ||| | || || | |||||||| | ||| | | ||| ||| | | Sbjct 108946 CCGTCTGCAACTTGGCGTCCCTTGCTCTCCCTTCTTTCGTGAACTACAGCGACGGAATC- 108888 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | ||| | | || || ||||| || || | ||| ||||| || || | Sbjct 108887 TATGACTTCCAGAAGCTACACGATGTCACCCAGGTTGTTGTTCGCAACCTGAATAGGATC 108828 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 || || || || ||||| | ||||| || || ||| | || || || Sbjct 108827 ATCGACGTCAACCACTATCCCGTCCCGGAGGCTCGCAACAGCAACATGCGCCATCGGCCC 108768 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 105282 ||||| |||||||| |||||||| || |||| |||| | ||||| || | | || || Sbjct 108767 ATTGGCCTCGGTGTCCAGGGTCTTGCTGATGCATTCTTGGCTTTG-CGACTGCCGTTCGA 108709 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || || || ||| | || | || || |||||||| || ||||| ||||| Sbjct 108708 GTCGCCTGAGGCTCGTGAACTGAACAAGAAGATCTTCGAGACCATCTACCACGCTGCTCT 108649 Query 105343 TG--AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 | | ||| ||| | || ||| || || | ||| | | ||| || || Sbjct 108648 CACCATGTCAGTGCAGC--TAGCCAAGGAGGAGGGCACCTATTCGTCTTATGAAGGCTCC 108591 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC 105460 |||| ||||| || || ||||||| ||| ||||||| || || || | || Sbjct 108590 CCAGTCTCACAGGGCGTCCTTCAATATGACATGTGGGGAGTCAAGCCCTCCGACCTCTGG 108531 Query 105461 GACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520 |||||||| |||||||||||| |||||| || | ||| | |||||||| | ||| | Sbjct 108530 GACTGGGATTCTCTCAAGGAACAGATCAAGCAGCATGGTGTGCGTAACAGCTTGCTCGTC 108471 Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580 || || |||||||| ||| || | || || |||| || || ||||||||||| || Sbjct 108470 GCCCCCATGCCAACCGCCAGTACTTCCCAGATTCTGGGCAACAACGAATGCTTTGAGCCT 108411 Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 ||||| | |||||||| | | | | | | || || |||||| | |||||||| Sbjct 108410 TACACCTCCAACATCTACCAGCGTCGCGTCTTGGCTGGTGAGTTTCAGGTTGTCAAC 108354 >seq1201 Length=295393 Score = 127 bits (140), Expect = 2e-24 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| || |||||||| ||| || | | ||||| | |||||| | Sbjct 156785 CTCATCGACACCTACATTAAGGAGCCTGCCCAGCGTACCTATCTCTTCAACGCCATCGAC 156726 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788 || | || || || | ||||| || || ||||| || ||| | || |||||| Sbjct 156725 ACCATCCCCTGCATCCGTAAGAAGGCTGACTGGGCCTTGCGCTGGATCACGGACACAAAG 156666 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || |||| || |||| ||| | || ||||| || ||||| ||||||||| Sbjct 156665 TCCA---CCTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGC 156609 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 ||| | ||| | | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 156608 GGTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTC 156549 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| ||||| ||||| ||||| |||||| || ||||| Sbjct 156548 TCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGC 156502 >seq2 Length=655221 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||| || || |||||||||| |||||| || || | ||||| | ||||| Sbjct 258583 GGCATCGATTTCGTCAATGAAGATGATGCAGGGCGCGTTCTTACGAGCCGTGGCGAAGAG 258642 Query 9763 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 9819 || || ||| || | | || ||||| || |||||||| ||||| | | | |||| Sbjct 258643 GTCGCG--CACTCTGGAAGGACCGACACCGACGAACATCTCGACAAACTCAGAGCCGGAG 258700 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || || | |||||| || ||| || || || |||| ||| ||||| |||||||| Sbjct 258701 ACGCTGAA-GAAGGGAACGCCAGACTCGCCTGCCGTGGCCTTGGCCAGAAGCGTCTTACC 258759 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || || || | ||| | |||||| || ||||||||||| || Sbjct 258760 AGTTCCAGGGGGTCCAGAGAGAATGGCACCACGCGGAATCTTGGCACC 258807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249397251360