Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq211 192 7e-44
seq1201 127 2e-24
seq2 84.2 3e-11
>seq211
Length=153984
Score = 192 bits (212), Expect = 7e-44
Identities = 919/1437 (64%), Gaps = 39/1437 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|||||| ||||| |||||||||| ||| | || || || || || |||| |||
Sbjct 109772 CCACAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTC 109713
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATG-TTCATTCACGCAACACCAACCCTC 104338
| ||||||||| || |||||| |||| || |||| ||||| | || || |
Sbjct 109712 ATTGAGACATACAACTTGATGTCGAGCAAG---TGCTTCACCCACGCTTCGCCCACATTG 109656
Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398
||||| || ||||| || | || |||| ||||| || ||| || |||||
Sbjct 109655 TTCAACGCCGGTACTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAA 109596
Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458
||||| || | || ||||| | ||||| | | || || || ||||| |||
Sbjct 109595 GACTCTATTGAGGGCATCTACGACACTCTGAAGACCTGCGCCATGATATCAAAAATGGCC 109536
Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-A 104516
|| || ||||| | | |||| | | |||| | ||| || ||| || |
Sbjct 109535 GGCGGCATTGGTCTAAATGTCCACCGCATCCGTGCCACTGG--CTCCTACATCGCCGGCA 109478
Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576
| ||||| || | ||| ||| || ||||| ||||| || ||| ||| || ||||
Sbjct 109477 CCAATGGCACCTCCAACGGTGTTACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCT 109418
Query 104577 ATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGG 104632
|||| | || | ||| | | | | || | | || |||| || ||||| |||
Sbjct 109417 ATGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGG 109359
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692
|| || || || | ||||| | || | || ||||| || | ||||||| ||
Sbjct 109358 CATGCCGACGTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGT 109299
Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752
||| || || ||| ||| || ||||| || ||||||||||||||| |||| ||| ||
Sbjct 109298 GCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAAG 109239
Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGG 104811
| || | ||| | || | ||||| || || || ||||| |||| ||| |||
Sbjct 109238 AACGGTGACTGGACACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGACTGCTATGGC 109179
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGC 104865
||||| || |||||| | ||| ||||||||| |||| | ||||| |||
Sbjct 109178 -GAGGAATTCGAAGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGAAAGACCAT 109120
Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925
|| || |||| || | ||| | || |||||| || | || || ||||| || |
Sbjct 109119 GAAGGC-CCAGAAGC-----TCTGGTATGCCATTCTCGAGGCCCAGACTGAGACCGGCAA 109066
Query 104926 ACCATACATGCTTTACAAAGACGCCTGT-AACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984
|| | |||||| ||||| || | || |||| ||||| || || |||||| | ||
Sbjct 109065 CCCTTTCATGCTCTACAAGGAT-CATGCCAACCGCAAGAGCAACCAGAAGAATCTCGGCA 109007
Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044
|| || ||||| || || || |||||| | || | | | | || ||| |
Sbjct 109006 CCATTCGAAGCTCCAACCTTTGCACGGAAATCATTGAGTACTCGGCCCCTGACGAGGTCG 108947
Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACA 105103
| || || ||| | || || | |||||||| | ||| | | ||| ||| | |
Sbjct 108946 CCGTCTGCAACTTGGCGTCCCTTGCTCTCCCTTCTTTCGTGAACTACAGCGACGGAATC- 108888
Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163
| ||| | | || || ||||| || || | ||| ||||| || || |
Sbjct 108887 TATGACTTCCAGAAGCTACACGATGTCACCCAGGTTGTTGTTCGCAACCTGAATAGGATC 108828
Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223
|| || || || ||||| | ||||| || || ||| | || || ||
Sbjct 108827 ATCGACGTCAACCACTATCCCGTCCCGGAGGCTCGCAACAGCAACATGCGCCATCGGCCC 108768
Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGA 105282
||||| |||||||| |||||||| || |||| |||| | ||||| || | | || ||
Sbjct 108767 ATTGGCCTCGGTGTCCAGGGTCTTGCTGATGCATTCTTGGCTTTG-CGACTGCCGTTCGA 108709
Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342
|| || || ||| | || | || || |||||||| || ||||| |||||
Sbjct 108708 GTCGCCTGAGGCTCGTGAACTGAACAAGAAGATCTTCGAGACCATCTACCACGCTGCTCT 108649
Query 105343 TG--AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400
| | ||| ||| | || ||| || || | ||| | | ||| || ||
Sbjct 108648 CACCATGTCAGTGCAGC--TAGCCAAGGAGGAGGGCACCTATTCGTCTTATGAAGGCTCC 108591
Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC 105460
|||| ||||| || || ||||||| ||| ||||||| || || || | ||
Sbjct 108590 CCAGTCTCACAGGGCGTCCTTCAATATGACATGTGGGGAGTCAAGCCCTCCGACCTCTGG 108531
Query 105461 GACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATG 105520
|||||||| |||||||||||| |||||| || | ||| | |||||||| | ||| |
Sbjct 108530 GACTGGGATTCTCTCAAGGAACAGATCAAGCAGCATGGTGTGCGTAACAGCTTGCTCGTC 108471
Query 105521 GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 105580
|| || |||||||| ||| || | || || |||| || || ||||||||||| ||
Sbjct 108470 GCCCCCATGCCAACCGCCAGTACTTCCCAGATTCTGGGCAACAACGAATGCTTTGAGCCT 108411
Query 105581 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637
||||| | |||||||| | | | | | | || || |||||| | ||||||||
Sbjct 108410 TACACCTCCAACATCTACCAGCGTCGCGTCTTGGCTGGTGAGTTTCAGGTTGTCAAC 108354
>seq1201
Length=295393
Score = 127 bits (140), Expect = 2e-24
Identities = 201/287 (70%), Gaps = 6/287 (2%)
Strand=Plus/Minus
Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731
||||| |||| || |||||||| ||| || | | ||||| | |||||| |
Sbjct 156785 CTCATCGACACCTACATTAAGGAGCCTGCCCAGCGTACCTATCTCTTCAACGCCATCGAC 156726
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788
|| | || || || | ||||| || || ||||| || ||| | || ||||||
Sbjct 156725 ACCATCCCCTGCATCCGTAAGAAGGCTGACTGGGCCTTGCGCTGGATCACGGACACAAAG 156666
Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848
|| |||| || |||| ||| | || ||||| || ||||| |||||||||
Sbjct 156665 TCCA---CCTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGC 156609
Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908
||| | ||| | | || | |||||||||||||| ||||||||||| ||||| ||||
Sbjct 156608 GGTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTC 156549
Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||||||| ||||| ||||| ||||| |||||| || |||||
Sbjct 156548 TCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGC 156502
>seq2
Length=655221
Score = 84.2 bits (92), Expect = 3e-11
Identities = 158/228 (69%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762
|||||| || || |||||||||| |||||| || || | ||||| | |||||
Sbjct 258583 GGCATCGATTTCGTCAATGAAGATGATGCAGGGCGCGTTCTTACGAGCCGTGGCGAAGAG 258642
Query 9763 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 9819
|| || ||| || | | || ||||| || |||||||| ||||| | | | ||||
Sbjct 258643 GTCGCG--CACTCTGGAAGGACCGACACCGACGAACATCTCGACAAACTCAGAGCCGGAG 258700
Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|| || | |||||| || ||| || || || |||| ||| ||||| ||||||||
Sbjct 258701 ACGCTGAA-GAAGGGAACGCCAGACTCGCCTGCCGTGGCCTTGGCCAGAAGCGTCTTACC 258759
Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|| || || || | ||| | |||||| || ||||||||||| ||
Sbjct 258760 AGTTCCAGGGGGTCCAGAGAGAATGGCACCACGCGGAATCTTGGCACC 258807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583249397251360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |