Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq211 253 2e-62
seq790 138 1e-27
seq1201 132 5e-26
>seq211
Length=153984
Score = 253 bits (280), Expect = 2e-62
Identities = 519/760 (68%), Gaps = 16/760 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
|||||||||| ||| | || ||| || ||||| ||| ||| |||||| |||
Sbjct 109759 TCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTCATTGAGACATACA 109700
Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309
|||| ||| ||| |||| ||| || ||||| |||| || |||||||||| ||||
Sbjct 109699 ACTTGATGTCGAGC---AAGTGCTTCACCCACGCTTCGCCCACATTGTTCAACGCCGGTA 109643
Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369
| || | ||| ||||| |||||| || || | |||||||| ||||| || || |
Sbjct 109642 CTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAAGACTCTATTGAGG 109583
Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429
|||||||||| || || ||| || ||| || || || | | || || || |||
Sbjct 109582 GCATCTACGACACTCTGAAGACCTGCGCCATGATATCAAAAATGGCCGGCGGCATTGGTC 109523
Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487
| | || || | || ||||||| | ||| | ||| || || || ||| | |
Sbjct 109522 TAAA-TG-TCCACCGCATCCGTGCCACTGGCTCCTACATCGCCGGCACCAATGGCACCTC 109465
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| | || | |||||||||||||||||||||||||| ||||| || ||| |||||||
Sbjct 109464 CAACGGTGTTACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCTATGTCGACCAGGG 109405
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| |||||| || | || ||||||||||||||||| ||||| |||||| | |
Sbjct 109404 TGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCATGCCGACGTCTT 109345
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667
|||||| | || || || ||| || || | || ||| | || ||||||||| ||
Sbjct 109344 CGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTT 109285
Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727
|| || ||||| || || ||||||||| | ||||||||| ||| || |||
Sbjct 109284 CCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAAGAACGGTGACTGGAC 109225
Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786
|||||||| || ||||||||||| || | | | | || ||| || ||||| || | |
Sbjct 109224 ACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGACTG-CTATGGCGAGGAATTCGAAG 109166
Query 53787 AGATGTATCGGACGTACGCAGTTC--AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGA 53844
|||| || ||||| || | ||| | | | |||| | ||||| | |
Sbjct 109165 CCTTGTACGAGAAGTACG-AGCGCGAAGGCAAGGGTCGA-AAGACCATGAAGGCCCAGAA 109108
Query 53845 GGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAA 53904
| | ||| |||| || ||| || |||| ||||| || | || | |||| ||||||
Sbjct 109107 GCTCTGGTATGCCATTCTCGAGGCCCAGACTGAGACCGGCAACCCTTTCATGCTCTACAA 109048
Query 53905 GGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
|||| | |||| ||||||||||||||||| |||||
Sbjct 109047 GGATCATGCCAACCGCAAGAGCAACCAGAAGAATCTCGGC 109008
>seq790
Length=831417
Score = 138 bits (152), Expect = 1e-27
Identities = 187/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
||||||||||| || |||||||| ||||| |||||||| | |||||| | |||||
Sbjct 690797 AATGTAACGAGGACTGGCAGCATCTGAACCACCGGCAAGACGGGAACCGAAGTTGCCACT 690856
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
||||| | | ||| | |||||||| || || |||||||| || | | | || ||
Sbjct 690857 GGGCTCAAGGCAGTTGATGTTGTTGGAACCGACGAAGTTTTGCGCGAGGCCAATGATTGT 690916
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
||||||| | ||||||||||| |||| |||||||| | || || || ||||
Sbjct 690917 CTGTTGGAGGGAGACTTCACCATGGTGGTACGATGTCTGCTCGGAGACATAACCAGCCAA 690976
Query 117490 CTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549
|| | ||||| ||| |||| |||| |||||| ||||| || || ||||| ||
Sbjct 690977 CTCAATAACCTTTTGATCTTTGGTCAAGTTCCTCTTGAAACAGGCGTACATGACCTTACG 691036
Query 117550 CTGACTTGGCTTCAGACCATC 117570
||||| |||||||| || ||
Sbjct 691037 CTGACCAGGCTTCAGTCCGTC 691057
>seq1201
Length=295393
Score = 132 bits (146), Expect = 5e-26
Identities = 528/814 (65%), Gaps = 28/814 (3%)
Strand=Plus/Plus
Query 74470 CGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGA 74529
|||| ||||| ||||| ||||||||||| || | | |||||||||||||| ||||||
Sbjct 156221 CGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATGAAGTCGA 156280
Query 74530 AAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGCGATCCGC 74587
| ||||| | ||| | | | | | | || | | | ||| || ||||| ||
Sbjct 156281 AGGGGTTGGCCGATTTGTAGACCTTGTCGT-TGCCGAGAGCGA-CCAACAGACGATCAGC 156338
Query 74588 CACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAG 74647
|| || | ||||| ||| |||| | | |||||| | ||| ||| |||||
Sbjct 156339 GACGAACTCGATGTATTGCTTCATCAGGTTGGAGTTCATGCCCAGGAGGGCGCAAGGCAG 156398
Query 74648 TGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTTGTGAATG 74705
|||||||| | ||||| ||| | || | ||| || | || ||| | | |||
Sbjct 156399 AGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGC--ATCGACGATAATATCCTCAATC 156456
Query 74706 TCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTG 74761
| | || |||| | | ||||||||||||| || | || |||||| ||
Sbjct 156457 ACCTGCTTGCTGGGGCGGTGCT---TCAGGTGAGAGTACAGAAGGCA-GGCAAAGTCGGT 156512
Query 74762 ATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTC 74820
|| ||| || ||||| | | || | || || || || | || || ||||| || |
Sbjct 156513 GTG-GAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCGGGCATGAGAC 156571
Query 74821 CACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACAC 74880
|||||||||| | ||| ||||||| ||| | ||| |||||||||||||| |||||
Sbjct 156572 CACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATGCCCTCGACGG 156631
Query 74881 ACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA----TCGGAAGTCATCCAAGTCTGA 74936
|||||||| || ||||| || ||||| |||| | | || ||||| |
Sbjct 156632 CGGCAAAGGCAACGAGGCGCTGGGCGAA-GGTGGACTTTGTGTCCGTGATCCAGCGCAAG 156690
Query 74937 GCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGC 74995
||||| ||||| ||| | | ||| |||| || ||||| || | |||||| |
Sbjct 156691 GCCCAGTCAGC-CTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGT 156749
Query 74996 CTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055
|| | || ||||| | | |||| || | ||| ||||| ||||| || |||||
Sbjct 156750 ACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGAAT 156809
Query 75056 CGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT 75115
||| | | |||| | ||||||| | |||||||| | | ||| || ||
Sbjct 156810 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGACTTCGCC 156869
Query 75116 TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175
|| ||| | | | ||||| ||||||||||||| || |||||||| || || ||
Sbjct 156870 AGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAG 156929
Query 75176 TACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTC 75232
| ||| |||| |||||| || ||| |||| ||| || | || ||
Sbjct 156930 AATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATC 156989
Query 75233 CCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266
| | ||||||||||||||| | |||||||||
Sbjct 156990 CTTGGACAAATCAATCTCCTCAGCAGTCCAGAAA 157023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547205301927200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |