Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq211 253 2e-62 seq790 138 1e-27 seq1201 132 5e-26 >seq211 Length=153984 Score = 253 bits (280), Expect = 2e-62 Identities = 519/760 (68%), Gaps = 16/760 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 |||||||||| ||| | || ||| || ||||| ||| ||| |||||| ||| Sbjct 109759 TCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTCATTGAGACATACA 109700 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 |||| ||| ||| |||| ||| || ||||| |||| || |||||||||| |||| Sbjct 109699 ACTTGATGTCGAGC---AAGTGCTTCACCCACGCTTCGCCCACATTGTTCAACGCCGGTA 109643 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | || | ||| ||||| |||||| || || | |||||||| ||||| || || | Sbjct 109642 CTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAAGACTCTATTGAGG 109583 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 |||||||||| || || ||| || ||| || || || | | || || || ||| Sbjct 109582 GCATCTACGACACTCTGAAGACCTGCGCCATGATATCAAAAATGGCCGGCGGCATTGGTC 109523 Query 53430 TCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 | | || || | || ||||||| | ||| | ||| || || || ||| | | Sbjct 109522 TAAA-TG-TCCACCGCATCCGTGCCACTGGCTCCTACATCGCCGGCACCAATGGCACCTC 109465 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | | || | |||||||||||||||||||||||||| ||||| || ||| ||||||| Sbjct 109464 CAACGGTGTTACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCTATGTCGACCAGGG 109405 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| |||||| || | || ||||||||||||||||| ||||| |||||| | | Sbjct 109404 TGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCATGCCGACGTCTT 109345 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 |||||| | || || || ||| || || | || ||| | || ||||||||| || Sbjct 109344 CGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTT 109285 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 || || ||||| || || ||||||||| | ||||||||| ||| || ||| Sbjct 109284 CCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAAGAACGGTGACTGGAC 109225 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 |||||||| || ||||||||||| || | | | | || ||| || ||||| || | | Sbjct 109224 ACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGACTG-CTATGGCGAGGAATTCGAAG 109166 Query 53787 AGATGTATCGGACGTACGCAGTTC--AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGA 53844 |||| || ||||| || | ||| | | | |||| | ||||| | | Sbjct 109165 CCTTGTACGAGAAGTACG-AGCGCGAAGGCAAGGGTCGA-AAGACCATGAAGGCCCAGAA 109108 Query 53845 GGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAA 53904 | | ||| |||| || ||| || |||| ||||| || | || | |||| |||||| Sbjct 109107 GCTCTGGTATGCCATTCTCGAGGCCCAGACTGAGACCGGCAACCCTTTCATGCTCTACAA 109048 Query 53905 GGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 |||| | |||| ||||||||||||||||| ||||| Sbjct 109047 GGATCATGCCAACCGCAAGAGCAACCAGAAGAATCTCGGC 109008 >seq790 Length=831417 Score = 138 bits (152), Expect = 1e-27 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| || |||||||| ||||| |||||||| | |||||| | ||||| Sbjct 690797 AATGTAACGAGGACTGGCAGCATCTGAACCACCGGCAAGACGGGAACCGAAGTTGCCACT 690856 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 ||||| | | ||| | |||||||| || || |||||||| || | | | || || Sbjct 690857 GGGCTCAAGGCAGTTGATGTTGTTGGAACCGACGAAGTTTTGCGCGAGGCCAATGATTGT 690916 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 ||||||| | ||||||||||| |||| |||||||| | || || || |||| Sbjct 690917 CTGTTGGAGGGAGACTTCACCATGGTGGTACGATGTCTGCTCGGAGACATAACCAGCCAA 690976 Query 117490 CTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549 || | ||||| ||| |||| |||| |||||| ||||| || || ||||| || Sbjct 690977 CTCAATAACCTTTTGATCTTTGGTCAAGTTCCTCTTGAAACAGGCGTACATGACCTTACG 691036 Query 117550 CTGACTTGGCTTCAGACCATC 117570 ||||| |||||||| || || Sbjct 691037 CTGACCAGGCTTCAGTCCGTC 691057 >seq1201 Length=295393 Score = 132 bits (146), Expect = 5e-26 Identities = 528/814 (65%), Gaps = 28/814 (3%) Strand=Plus/Plus Query 74470 CGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGA 74529 |||| ||||| ||||| ||||||||||| || | | |||||||||||||| |||||| Sbjct 156221 CGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATGAAGTCGA 156280 Query 74530 AAGGGTTCTTTGCACCGTAAA--TAGGCTTCTCCCCAAACTGTGCCATGAGGCGATCCGC 74587 | ||||| | ||| | | | | | | || | | | ||| || ||||| || Sbjct 156281 AGGGGTTGGCCGATTTGTAGACCTTGTCGT-TGCCGAGAGCGA-CCAACAGACGATCAGC 156338 Query 74588 CACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAG 74647 || || | ||||| ||| |||| | | |||||| | ||| ||| ||||| Sbjct 156339 GACGAACTCGATGTATTGCTTCATCAGGTTGGAGTTCATGCCCAGGAGGGCGCAAGGCAG 156398 Query 74648 TGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTTGTGAATG 74705 |||||||| | ||||| ||| | || | ||| || | || ||| | | ||| Sbjct 156399 AGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGC--ATCGACGATAATATCCTCAATC 156456 Query 74706 TCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTG 74761 | | || |||| | | ||||||||||||| || | || |||||| || Sbjct 156457 ACCTGCTTGCTGGGGCGGTGCT---TCAGGTGAGAGTACAGAAGGCA-GGCAAAGTCGGT 156512 Query 74762 ATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTC 74820 || ||| || ||||| | | || | || || || || | || || ||||| || | Sbjct 156513 GTG-GAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCGGGCATGAGAC 156571 Query 74821 CACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACAC 74880 |||||||||| | ||| ||||||| ||| | ||| |||||||||||||| ||||| Sbjct 156572 CACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATGCCCTCGACGG 156631 Query 74881 ACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA----TCGGAAGTCATCCAAGTCTGA 74936 |||||||| || ||||| || ||||| |||| | | || ||||| | Sbjct 156632 CGGCAAAGGCAACGAGGCGCTGGGCGAA-GGTGGACTTTGTGTCCGTGATCCAGCGCAAG 156690 Query 74937 GCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGC 74995 ||||| ||||| ||| | | ||| |||| || ||||| || | |||||| | Sbjct 156691 GCCCAGTCAGC-CTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGT 156749 Query 74996 CTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 || | || ||||| | | |||| || | ||| ||||| ||||| || ||||| Sbjct 156750 ACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGAAT 156809 Query 75056 CGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT 75115 ||| | | |||| | ||||||| | |||||||| | | ||| || || Sbjct 156810 GTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGACTTCGCC 156869 Query 75116 TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175 || ||| | | | ||||| ||||||||||||| || |||||||| || || || Sbjct 156870 AGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAG 156929 Query 75176 TACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGTC 75232 | ||| |||| |||||| || ||| |||| ||| || | || || Sbjct 156930 AATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATC 156989 Query 75233 CCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | | ||||||||||||||| | ||||||||| Sbjct 156990 CTTGGACAAATCAATCTCCTCAGCAGTCCAGAAA 157023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547205301927200