Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1544 122 5e-23 seq442 122 5e-23 seq428 100 2e-16 >seq1544 Length=892 Score = 122 bits (134), Expect = 5e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||||| ||| | || || || |||||| || || || ||||| | Sbjct 152 GCCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGC 211 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || | ||||||| || || ||||| ||||| || || | ||| || ||||| || Sbjct 212 AAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGG 271 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||||| || |||||| | |||||| | ||| |||||| |||||| | Sbjct 272 AATACCCTCCTTATCCTGGATCTTA-GCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGA 330 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || ||||||||||| | || |||||||| |||||||| Sbjct 331 CCTCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || | |||||||||||| | || ||||| ||||| || ||||| || || | Sbjct 381 CCACCACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCC 440 Query 34538 AAAGT-GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596 ||||| ||| | || || || || || |||||||| || || | ||| || ||||| Sbjct 441 AAAGTCCTTC---CATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGA 497 Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTC 34655 || | ||| ||||| || |||| || | || ||| | || || || ||||| Sbjct 498 GGGATTCCTTCCTTATCCTGGATC-TTAGCCTTCACGTTGTCGATGGTATCAGAACTCTC 556 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || ||||| ||||| | ||| || ||||| |||||||| Sbjct 557 AACCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 >seq442 Length=625744 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| ||||| || |||||| |||||||| || || || || || || Sbjct 417198 AGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGG 417257 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || ||||| ||||| || | |||||| ||||| || || | |||||| Sbjct 417258 CCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCC 417317 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | ||||||||| |||||| || | ||| Sbjct 417318 TTGTCCTGGATC-TTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGT 417376 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| | || ||||| ||||||||||| Sbjct 417377 AATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 >seq428 Length=571 Score = 100 bits (110), Expect = 2e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| ||||| ||||| || || || ||||| | | || || | |||||||| || Sbjct 362 ATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTG 421 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||| || || || |||||||| || ||||| || | || || |||||| ||||| Sbjct 422 CTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTT 481 Query 34623 TTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 || || || | || ||||| |||||| || || | ||| || ||||| |||| Sbjct 482 G-GTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGG 540 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| |||||||| ||||||||||| ||| Sbjct 541 TTAGGGTTTTCACGAAAATCTGCATTTTG 569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723600860412