Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1544 122 5e-23
seq442 122 5e-23
seq428 100 2e-16
>seq1544
Length=892
Score = 122 bits (134), Expect = 5e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
||| || || ||||||| ||| | || || || |||||| || || || ||||| |
Sbjct 152 GCCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGC 211
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
||| || | ||||||| || || ||||| ||||| || || | ||| || ||||| ||
Sbjct 212 AAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGG 271
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657
| |||||||| || |||||| | |||||| | ||| |||||| |||||| |
Sbjct 272 AATACCCTCCTTATCCTGGATCTTA-GCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGA 330
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || ||||||||||| | || |||||||| ||||||||
Sbjct 331 CCTCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379
Score = 82.4 bits (90), Expect = 5e-11
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537
|| || | |||||||||||| | || ||||| ||||| || ||||| || || |
Sbjct 381 CCACCACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCC 440
Query 34538 AAAGT-GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
||||| ||| | || || || || || |||||||| || || | ||| || |||||
Sbjct 441 AAAGTCCTTC---CATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGA 497
Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTC 34655
|| | ||| ||||| || |||| || | || ||| | || || || |||||
Sbjct 498 GGGATTCCTTCCTTATCCTGGATC-TTAGCCTTCACGTTGTCGATGGTATCAGAACTCTC 556
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | ||| || ||||| ||||| | ||| || ||||| ||||||||
Sbjct 557 AACCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607
>seq442
Length=625744
Score = 122 bits (134), Expect = 5e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| ||||| || |||||| |||||||| || || || || || ||
Sbjct 417198 AGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGG 417257
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || ||||| ||||| || | |||||| ||||| || || | ||||||
Sbjct 417258 CCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCC 417317
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || ||| | ||||||||| |||||| || | |||
Sbjct 417318 TTGTCCTGGATC-TTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGT 417376
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || ||||| | || ||||| |||||||||||
Sbjct 417377 AATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415
>seq428
Length=571
Score = 100 bits (110), Expect = 2e-16
Identities = 149/209 (71%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562
||| ||||| ||||| || || || ||||| | | || || | |||||||| ||
Sbjct 362 ATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTG 421
Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
||||| || || || |||||||| || ||||| || | || || |||||| |||||
Sbjct 422 CTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTT 481
Query 34623 TTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681
|| || || | || ||||| |||||| || || | ||| || ||||| ||||
Sbjct 482 G-GTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGG 540
Query 34682 TTAACGTTTTCACAAAAATCTGCATGTTG 34710
||| |||||||| ||||||||||| |||
Sbjct 541 TTAGGGTTTTCACGAAAATCTGCATTTTG 569
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314723600860412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |