Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq442 120 3e-22 seq1544 105 6e-18 seq632 105 6e-18 seq428 91.5 1e-13 >seq442 Length=625744 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | ||||| | || ||||| |||| Sbjct 417415 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACGATTACCTTAGAGGTGGAGTCGTCA 417356 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 417355 GACACAATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 417296 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || | || ||| | ||| | ||||| |||||| Sbjct 417295 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 417236 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||||||| | || ||||| Sbjct 417235 ATTCAGAAGGAGTCGACCCTCCACTTGGT 417207 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || || || ||||| | || Sbjct 417929 CATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTC 417870 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || || || || || || || ||||| || ||||| || Sbjct 417869 CGATACCATCGACAATGTGAAGTCTAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCA 417810 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||||||||| || | || || | ||| | || |||||||| Sbjct 417809 GCAACGTCTTATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGTCTGATTACAA 417750 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | || |||||| | ||| | || |||||||| Sbjct 417749 CATCCAGAAGGAATCTACCCTTCACTTGGTTCTCCGTCTCCGCGGTGGCAT 417699 Score = 104 bits (114), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26998 TTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTG 27057 |||| || ||||| || |||||| | || || || || ||||| | |||| | || | Sbjct 417633 TTGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGCGACACTATCG 417574 Query 27058 AGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAA 27117 | | ||||| || || || || || || ||||| || ||||| || |||||| | | Sbjct 417573 ACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCA 417514 Query 27118 TATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGG 27177 | | ||| ||||| || | || ||| || ||| | ||||| ||||||||||| |||| Sbjct 417513 TCTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCCGACTACAACATTCAGAAGG 417454 Query 27178 AGTCGACCTTACATTTGGT--TTTGCGTTTGCGG 27209 |||| ||| | || ||||| || || || |||| Sbjct 417453 AGTCTACCCTTCACTTGGTCCTTCGCCTTCGCGG 417420 >seq1544 Length=892 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| || ||||||| || || || || || Sbjct 379 ATGCAGATCTTTGTGAAGACTCTTACCGGTAAAACTATTACCCTCGAGGTCGAGAGCTCA 320 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || || || || || || || || ||||| Sbjct 319 GACACCATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGTATTCCTCCGGATCAG 260 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || |||||||| | ||| || | |||||||| Sbjct 259 CAGAGGTTGATCTTTGCGGGTAAGCAGCTGGAAGACGGAAGGACTCTTGCTGATTACAAT 200 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | || | || ||||| || |||||||| Sbjct 199 ATCCAGAAGGAGTCGACCCTTCACCTTGTGCTGCGTCTGAGGGGTGGC 152 >seq632 Length=500 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26982 TACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAA 27041 ||| | |||||||| || || || || || || ||||| | || |||||||| || || Sbjct 17 TACACTATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAG 76 Query 27042 CCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCC 27101 || || | || || | || ||| || ||||| ||||||||||| || || || Sbjct 77 CCCAGTGATACTATAGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCCCCT 136 Query 27102 GATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGAT 27161 || |||||| | || || | || || ||||| |||||||| | || | ||||| Sbjct 137 GACCAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGAC 196 Query 27162 TACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || |||||||| ||| | ||| | || | ||| | || ||||| Sbjct 197 TACAACATCCAGAAGGAGTCTACCCTTCATCTTGTCCTTCGTCTCCGTGGTGG 249 >seq428 Length=571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || ||||| || | || || || || || || | Sbjct 565 ATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGCAGC 506 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||||||||||||||| || || || ||||| Sbjct 505 GACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAG 446 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || || | ||||| | ||| | |||||||||| Sbjct 445 CAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTACAAT 386 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || ||||| || || | ||| | ||| Sbjct 385 ATCCAGAAGGAATCTACTCTTCATCTTGTT 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909897345280