Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1112 109 5e-19 >seq1112 Length=320824 Score = 109 bits (120), Expect = 5e-19 Identities = 212/305 (70%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT---TC 34378 || || ||||||||||||| |||| || || || || || |||| ||| || || Sbjct 255794 GGCGTCAAGATCTGGGACGGCAACGGCTCCCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 255852 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 ||| | || | | ||||| | ||||| ||||| || ||||| ||| |||||||||| Sbjct 255853 CCACCGCG--AAGTCGGCGATCTCGGCCCCGTCTATGGCTTCCAATGGCGACACTTTGGC 255910 Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGT 34496 ||||| || || | || ||| ||||||| | || ||||| | |||||||| || | Sbjct 255911 GCGGAATA-CGTCGACGCAAAGACGGACTACACAGGCCAGGGCGTCGACCAGCTCGCCG- 255968 Query 34497 ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556 | || ||| ||| | ||| |||||| | ||| | | ||| || | ||||||||| Sbjct 255969 AGGTCATCCACAAGCTCAAGACGAACCCCTACGACCGCCGCATCCTGCTCAGCGCGTGGA 256028 Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACG 34616 |||| ||| || |||||| || || |||||||||| | ||| ||||||| Sbjct 256029 ACCCCGCGGACCTGAAGAAGATGGCCCTGCCGCCGTGCCACATGTTTGCCCAGTTCTACG 256088 Query 34617 TCGCG 34621 || || Sbjct 256089 TCTCG 256093 Score = 109 bits (120), Expect = 5e-19 Identities = 212/305 (70%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| ||| | |||||||||| || || |||||| || ||| Sbjct 256093 CGAGACGTAGAACTGGGCAAACATGTGGCACGGCGGCAGGGCCATCTTCTTCAGGTCCGC 256034 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 ||||||||||||| | || ||| | | ||| | |||||| ||| | ||| ||| Sbjct 256033 GGGGTTCCACGCGCTGAGCAGGATGCGGCGGTCGTAGGGGTTCGTCTTGAGCTTGTGGAT 255974 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATAC 6901 || | | || |||||||| | ||||| || | ||||||| ||| || | || || Sbjct 255973 GACCT-CGGCGAGCTGGTCGACGCCCTGGCCTGTGTAGTCCGTCTTTGCGTCGACG-TAT 255916 Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 ||||| |||||||||| ||| ||||| || ||||| ||||| | ||||| | | || Sbjct 255915 TCCGCGCCAAAGTGTCGCCATTGGAAGCCATAGACGGGGCCGAGATCGCCGACTT--CGC 255858 Query 6962 GATGGGA---ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | ||||| || ||| |||| || || || || || |||| ||||||||||||| Sbjct 255857 GGTGGGAGAGGCCGACGC-TGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTG 255799 Query 7019 ACCCC 7023 || || Sbjct 255798 ACGCC 255794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448253636470080