Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1544 190 5e-43 seq632 158 3e-33 seq643 154 3e-32 seq428 154 3e-32 seq442 152 1e-31 seq835 120 7e-22 seq211 100 7e-16 >seq1544 Length=892 Score = 190 bits (210), Expect = 5e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | |||||||| ||||| || || || || |||||||| || || ||||| Sbjct 611 TCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAG 670 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || || ||||| || || |||||||| || ||||| |||||||| |||| Sbjct 671 AGTACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAAT 730 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||||||||| || ||||| |||||||||||||| || || ||||| Sbjct 731 TCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTC 790 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||||||| |||||||| || || || || || || | ||||| || Sbjct 791 GAGAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCATCTT 838 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | |||||||||||||| || || || |||||||| || || || | || Sbjct 386 ACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGT 445 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||| || |||||||| || || ||||| | | || || || ||||| | ||| Sbjct 446 CCTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCC 505 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| |||||||| |||||||| ||||| || ||||||||||| Sbjct 506 TTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACCTCGAG 565 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| ||||| ||||| | |||||| Sbjct 566 GGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| || ||||| || ||||| ||||| |||||||| ||| Sbjct 168 AGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCT 227 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || || || ||||||| || ||||| ||| Sbjct 228 TCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCC 287 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| ||||| || |||||||| || || || Sbjct 288 TGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTT 347 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| ||||| | |||||| Sbjct 348 TTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 >seq632 Length=500 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| ||||| || ||||| || |||||||| || || | | || || |||||| Sbjct 234 AGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCT 175 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | ||||||||||| |||| |||||| |||||| Sbjct 174 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCC 115 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || ||||| || || ||| | |||||||| |||||||| || Sbjct 114 TGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTT 55 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 54 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 >seq643 Length=80414 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| || ||| ||| || |||||||| || || | || Sbjct 65236 TCCACGCAGGCGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAG 65295 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || |||||||| || |||||||| ||||| || ||||| || || | Sbjct 65296 GGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGAT 65355 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || || || ||||||||||| || || ||||| Sbjct 65356 GCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTC 65415 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 65416 AAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 65460 >seq428 Length=571 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| || || ||||| |||||||| || || || ||||| || ||||| || | ||| Sbjct 344 ACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGT 403 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||| |||||||| || ||||| || | || || || || ||||| | || Sbjct 404 GCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACC 463 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || ||||| || || || ||||||||||| ||| || |||||||| Sbjct 464 TTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAG 523 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || || || || || || || | ||||||||| Sbjct 524 GGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568 >seq442 Length=625744 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || || || || |||||||| ||||| | | ||| | ||||| Sbjct 417717 AGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCC 417776 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| ||||| ||||| ||||| || || | || ||||| ||| Sbjct 417777 TCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCC 417836 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||| || || || |||||||| ||||| ||| Sbjct 417837 TGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTC 417896 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 417897 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 417928 Score = 149 bits (164), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| | |||||| || ||||| || || ||||| || || | ||||| Sbjct 417423 CGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTA 417482 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| |||||||| || || || ||||| || |||| || Sbjct 417483 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCC 417542 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCG 211070 ||||| ||||||||||| || ||||| ||||| ||||| ||| || |||||| Sbjct 417543 TCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGA---CTCCACCTCG 417599 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 || ||||| ||||| || ||||||||||| |||| Sbjct 417600 AGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAA 417633 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || || ||||| || || ||||| || || | || Sbjct 417191 TCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAG 417250 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || |||||||| || || |||||||| || || ||||| || || | Sbjct 417251 GGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGAT 417310 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| ||||| ||||| || || ||||| Sbjct 417311 GCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTC 417370 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || |||||||| || || || ||||| || || | |||||| Sbjct 417371 TAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 >seq835 Length=459924 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | || || || ||||||||||| |||||||| Sbjct 159510 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 159451 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || || | || ||||||||||||||||| || || || ||| Sbjct 159450 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 159391 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 159390 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 159332 >seq211 Length=153984 Score = 100 bits (110), Expect = 7e-16 Identities = 189/277 (68%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 178094 TTCTTTTGGTTGCTCTTTCTGCAAATGGCAT---CTTTGTACGCAATGAAGGGCATTCCC 178150 ||||| ||||||||||| | | |||||| | ||||| ||||| || | || Sbjct 109015 TTCTTCTGGTTGCTCTTGCGGT---TGGCATGATCCTTGTAGAGCATGAAAGGGTTGCCG 109071 Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210 ||||| || ||| |||||||| || ||| |||| |||||| | |||||| Sbjct 109072 GTCTCAGTCTGGGCCTCGAGAATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTTCGA 109131 Query 178211 GCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCA 178270 | || ||||| ||||||||| | ||| | | ||||||||| |||||| || Sbjct 109132 CCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGAATTCCTCGCCATAGCAGTCG 109191 Query 178271 TCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGT 178330 | ||||| || ||| ||||| || | || |||| | ||||| | || |||||| Sbjct 109192 GCAAGACCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGC 109251 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 ||||||||||| |||| | |||| | ||| ||||| Sbjct 109252 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAA 109288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159128772042860