Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq442 104 2e-17
seq643 96.9 3e-15
>seq442
Length=625744
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
|||||| | | ||| | |||||| || || || ||| || || || || || ||||
Sbjct 417188 GCCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGA 417247
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
|| || || |||| |||||||| || || ||||| ||||||||||||||||||| |||
Sbjct 417248 GAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGG 417307
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235
| || ||| |||||| ||| || |||| ||| | | | || || ||||||||
Sbjct 417308 GATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATTGTGTCTGACGACTCCA 417366
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || | || || | || || ||||| || || || || || |||||
Sbjct 417367 CCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415
Score = 89.7 bits (98), Expect = 4e-13
Identities = 152/218 (70%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
||||| | | ||| | ||||| || || || ||| || || || || || ||||
Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || || |||| || ||||| ||||| || || || |||||||||||||||| |||
Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGA 417536
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236
| || ||| || ||| ||| || |||| ||| | | | || ||||| ||||||||
Sbjct 417537 ATGCCCTCCTTATCCTGGATCTTGGACTTGA-CGTTGTCGATAGTGTCGCTAGACTCCAC 417595
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274
|| | ||||| | || || || || || || ||||
Sbjct 417596 CTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAA 417633
>seq643
Length=80414
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || |||||||| || || || || || |||| || || || |||| || |||||
Sbjct 65258 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 65317
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || || || || || ||||||||||||| ||| | || ||| |||||| ||| ||
Sbjct 65318 TTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 65377
Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261
|||| | | | || ||| |||||||| || | |||||| | || |||||
Sbjct 65378 GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTG 65437
Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284
|| || || || ||||| |||||
Sbjct 65438 AGGGTCTTGACGAAGATCTGCAT 65460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429537412323932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |