Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq428 136 3e-27
seq632 120 2e-22
>seq428
Length=571
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |
Sbjct 568 AAAATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGC 509
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || || || | || |||||||||||| | || || ||
Sbjct 508 AGCGACACCATCGACAATGTCAAGACCAAGA-TTCAAGACAAAGAAGGTATCCCTCCGGA 450
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| |||||||| || || || || || || || ||||| | |||||| || | ||||||
Sbjct 449 TCAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTA 390
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || || || || || || | ||| | ||| | ||| | || || |||
Sbjct 389 CAATATCCAGAAGGAATCTACTCTTCATCTTGTTCTCAGGCTTCGTGGTGGA 338
>seq632
Length=500
Score = 120 bits (132), Expect = 2e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| ||||| |||||||| || ||||| |||
Sbjct 23 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCCAGT 82
Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| | | |||| ||||| | || ||| ||||||||||| | || || || ||
Sbjct 83 GATACTATAGAAAATGTTAAAGC-CAAGATTCAGGACAAAGAAGGAATTCCCCCTGACCA 141
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | || || ||||| || ||||| ||||||| | | || || ||| |||||
Sbjct 142 ACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAA 201
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 202 CATCCAGAAGGAGTCTAC 219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338003157114512
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |