Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq428 154 4e-32 seq1544 140 8e-28 seq643 131 4e-25 seq442 131 4e-25 seq1108 111 4e-19 seq211 96.9 8e-15 seq1204 91.5 4e-13 >seq428 Length=571 Score = 154 bits (170), Expect = 4e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| || || ||||| || ||||| ||||| || |||| ||||||||||||||| || Sbjct 344 ACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGT 403 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| |||||||| || | || || || || || || ||||| Sbjct 404 GCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACC 463 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| ||||| ||| ||| ||||||||||| | | || || || | Sbjct 464 TTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAG 523 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || | ||||| | ||| | |||||||| Sbjct 524 GGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568 >seq1544 Length=892 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || || ||||| || |||| ||||| || || | ||| | || || Sbjct 624 AGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCC 683 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 684 TCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCC 743 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 744 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTC 803 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || |||| ||||| | ||| | |||||| || Sbjct 804 TTTCCGGTCAGGGTTTTAACGAATATTTGCATCTT 838 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| |||||||| || || || || || |||| ||||||||| || | ||| || || || Sbjct 167 CAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTC 226 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| | | || || || || |||||||| ||||| || Sbjct 227 TTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATC 286 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| || || |||||||||||| | || || || | || || || Sbjct 287 CTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGT 346 Query 225681 CTTGCCCGTCAAAGTTTT 225698 || || || | ||| || Sbjct 347 TTTACCGGTAAGAGTCTT 364 >seq643 Length=80414 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| ||| || || |||| ||||| |||| | || Sbjct 65239 ACGCAGGCGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGT 65298 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || |||||||| || || || Sbjct 65299 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCC 65358 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 65359 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 65418 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | || || | ||| | ||||| Sbjct 65419 GGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 65460 >seq442 Length=625744 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || || | ||||| |||| | || | || || Sbjct 417204 AGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 417263 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| |||||||| || || |||||||| || || || |||||||| Sbjct 417264 TCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 417323 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| |||||||| | ||||| ||||| || |||||| Sbjct 417324 TGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTC 417383 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 417384 TTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||| || || || || || || | ||||| |||| | || Sbjct 417423 CGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTA 417482 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||||||||| || || || |||||||| ||||| || Sbjct 417483 CGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCC 417542 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| || |||||||| ||| || ||||| ||||| | ||||| || | Sbjct 417543 TCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGG 417602 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || | ||| || Sbjct 417603 GTGATGGTCTTGCCAGTGAGAGTCTT 417628 >seq1108 Length=2559 Score = 111 bits (122), Expect = 4e-19 Identities = 194/280 (69%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| |||| | |||||||| | ||||||| || ||| | | Sbjct 246 AACATTATATTTAATTTTTGCTTTATTTTCTGGGTTATTAGGTACAGCCTTCTCTGTATT 305 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || ||||||||| || || ||| || ||||| | | ||| |||| | || Sbjct 306 AATTAGATTAGAATTAAGTGGACCAGGTGTTC-AATAT--ATCTCTGATAACCAATTATA 362 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| || || ||||| || | | ||||| ||||| | |||||||| | | Sbjct 363 TAATAGTATAATAACAGCGCACGCTATATTAATGATATTCTTCATGGTTATGCCAGCATT 422 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 ||||| ||||| || |||| | | ||||||||| | |||| ||||| |||||||| Sbjct 423 AATAGGGGGTTTTGGTAATTTCCTTATGCCTTTAATGGTAGGTGGGCCTGACATGGCTTT 482 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || | || || |||||||| ||| || |||| ||| Sbjct 483 CCCTAGATTAAATAACATAAGTTTCTGACTATTACCACCT 522 >seq211 Length=153984 Score = 96.9 bits (106), Expect = 8e-15 Identities = 187/275 (68%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGT---CTTTGTAGACGATGAAGGGCATGCCCACC 193556 ||||||||| |||| || | |||| | | ||||||| ||||| || |||| | Sbjct 109018 TTCTGGTTGCTCTTGCG---GTTGGCATGATCCTTGTAGAGCATGAAAGGGTTGCCGGTC 109074 Query 193557 TCCGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCC 193616 || | || || |||||||| || ||| || | || || |||| ||| ||| || Sbjct 109075 TCAGTCTGGGCCTCGAGAATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTTCGACCC 109134 Query 193617 TTTCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCG 193676 || ||||| | ||||||||| ||||||| | || || || | || ||| ||| | Sbjct 109135 TTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGAATTCCTCGCCATAGCAGTCGGCA 109194 Query 193677 AGACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTC 193736 ||||| || || || || || | || |||| || || | | ||||| | |||| Sbjct 109195 AGACCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTC 109254 Query 193737 ATGAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 |||||||| |||| |||||| |||| |||||| Sbjct 109255 ATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAG 109289 >seq1204 Length=1755 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 || ||||| || |||||| | || || ||||| | ||||| ||||||||| | || ||| Sbjct 1620 CAGCTTTATAATGTTATTGTAACTGCCCATGCACTGGTTATAATTTTCTTTATAGTAATG 1561 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | ||| | || ||||| |||||||| | ||||||||||||| ||| | ||| Sbjct 1560 CCTTTGATGGTGGGTGGTTTTGGAAATTGGCTACTTCCTTTAATGATAGGTTCAATTGAC 1501 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATT 7709 || |||||| | | || ||| |||| ||||| || Sbjct 1500 ATAATTTTTCCTCGTTTAAATAATCTAAGGTTTTGGTT 1463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192507303165416