Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1112 95.1 1e-14 >seq1112 Length=320824 Score = 95.1 bits (104), Expect = 1e-14 Identities = 197/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 29531 TGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCT------C 29584 || ||||||||||||| | || ||||| |||| || | || | ||| | Sbjct 256443 TGCGGGTCGTAGCCCTTGACCACAAAGTCCTCCACCTTCCAGCCATCAATGCTGCAACCC 256384 Query 29585 TCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATC 29644 || |||| |||| ||| ||| | || ||| | ||||||| ||| ||||| | | Sbjct 256383 GCCTCCCTGTTGTTGATCTCCAGCATCGGGAAGTCCCGCGGCTCCCGCTCCAGCTGCACC 256324 Query 29645 CTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTG-GACAAACTC 29703 | |||| ||||||||||| ||| ||||| || || |||| | ||| | | || Sbjct 256323 TTGAGCGCGTCCACGTGGTCCGCGTAAACGTGCGCGTCGCCCATGACGTGCGTGAGGCTG 256264 Query 29704 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29763 || || | || ||| || | || ||||||| || || || | |||||| || || Sbjct 256263 -CCAGGAACCAGGTCGGACGCGCGCGCAATCATGTGTGTCAGCAGCGCGTAGCTCGCAAT 256205 Query 29764 GTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814 ||| || ||||| |||||||||||||| | || | |||||| || ||||| Sbjct 256204 GTTGAACGGCACGCCGAGCCCCATGTCGCAGGAGCGCTGGTACAGTTGGCA 256154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406155458021704