Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1201 118 9e-22 >seq1201 Length=295393 Score = 118 bits (130), Expect = 9e-22 Identities = 344/526 (65%), Gaps = 13/526 (2%) Strand=Plus/Plus Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 || || ||||| || || |||| |||||||| | ||| | ||| || ||||| || || Sbjct 156535 ATGAGCTCGTTGGAGAAGGTTAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATG 156594 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703 | ||| || | || ||||| ||||| || ||||||||||| || || | || Sbjct 156595 GAGGCGAAAGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGG 156654 Query 4704 CCGAACGAGCTGGCTT--TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAA 4761 |||| | | | ||| |||| | ||||| || ||||||| ||| || || | Sbjct 156655 GCGAAGGTG--GACTTTGTGTCCGTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGA 156712 Query 4762 CGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAA 4818 ||| || || |||| || ||||| || | | ||| | || || || | || Sbjct 156713 TGCAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGTACGCTGGGCA---GGCTCCTTAA 156769 Query 4819 TATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAA 4878 | || ||||| || || ||| || | || || || || || || || ||||| | Sbjct 156770 TGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGA 156829 Query 4879 ATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGT 4938 | ||||| ||||| | || || | || || |||||| | | || | || || | || Sbjct 156830 AGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGACTTCGCCAGAGAAACGCTCAACCAGGT 156889 Query 4939 TTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACT 4998 | || || || || ||||| || || || || || | || ||||| || ||||||| Sbjct 156890 TCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGAGAGATGAAGTACT 156949 Query 4999 GTTCGTCAGGCTTAA---GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTT 5055 || ||| || | || ||||||| | | | ||| || | ||||||| || | Sbjct 156950 TCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAAATCAATCTCCT 157009 Query 5056 CAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 || ||||||| || || || || || || |||||||| |||||| Sbjct 157010 CAGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAAAT 157055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041459900812