Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1201 118 9e-22
>seq1201
Length=295393
Score = 118 bits (130), Expect = 9e-22
Identities = 344/526 (65%), Gaps = 13/526 (2%)
Strand=Plus/Plus
Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643
|| || ||||| || || |||| |||||||| | ||| | ||| || ||||| || ||
Sbjct 156535 ATGAGCTCGTTGGAGAAGGTTAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATG 156594
Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703
| ||| || | || ||||| ||||| || ||||||||||| || || | ||
Sbjct 156595 GAGGCGAAAGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGG 156654
Query 4704 CCGAACGAGCTGGCTT--TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAA 4761
|||| | | | ||| |||| | ||||| || ||||||| ||| || || |
Sbjct 156655 GCGAAGGTG--GACTTTGTGTCCGTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGA 156712
Query 4762 CGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAAATGGGTCTTGAA 4818
||| || || |||| || ||||| || | | ||| | || || || | ||
Sbjct 156713 TGCAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGTACGCTGGGCA---GGCTCCTTAA 156769
Query 4819 TATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAA 4878
| || ||||| || || ||| || | || || || || || || || ||||| |
Sbjct 156770 TGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGA 156829
Query 4879 ATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGT 4938
| ||||| ||||| | || || | || || |||||| | | || | || || | ||
Sbjct 156830 AGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGACTTCGCCAGAGAAACGCTCAACCAGGT 156889
Query 4939 TTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACT 4998
| || || || || ||||| || || || || || | || ||||| || |||||||
Sbjct 156890 TCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGAGAGATGAAGTACT 156949
Query 4999 GTTCGTCAGGCTTAA---GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTT 5055
|| ||| || | || ||||||| | | | ||| || | ||||||| || |
Sbjct 156950 TCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAAATCAATCTCCT 157009
Query 5056 CAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101
|| ||||||| || || || || || || |||||||| ||||||
Sbjct 157010 CAGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAAAT 157055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427041459900812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |