Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq211 134 2e-26 seq1201 122 1e-22 >seq211 Length=153984 Score = 134 bits (148), Expect = 2e-26 Identities = 445/689 (65%), Gaps = 20/689 (3%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || ||||| || || || ||||||| || ||||||||| | | || ||||| ||||| Sbjct 109198 CCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATG 109257 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 ||||||||||| ||||| || || | || || || |||| | || || || || Sbjct 109258 AAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCG 109317 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| || || | |||||| | | || | |||||| || || || || || Sbjct 109318 TGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATG 109377 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | || || || || || || ||||| || | ||| | ||||||||| || | Sbjct 109378 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAG 109437 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || | | ||| || ||| |||||| || || ||||| || || | || || ||| Sbjct 109438 ACGCGGAGCATAGGGGTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCA 109497 Query 78255 CTTGCGCGAATATTACTAATGGA----TATCCCTATTCCTCCTGCCATCTTAGATATTAG 78310 | || || || |||| || || || || || ||||| || ||||| | Sbjct 109498 GTGGCACGGAT----GCGGTGGACATTTAGACCAATGCCGCCGGCCATTTTTGATATCAT 109553 Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAG 78370 ||||| |||| || |||||||| ||||| ||| ||| ||| |||||| | || Sbjct 109554 GGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAG 109613 Query 78371 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 ||| ||| |||| || || ||| || || || || ||||| || || || || Sbjct 109614 AAAGCAGGACGACAGCTGTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTG 109673 Query 78431 CGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT----AGCTGA--TTCTATGTC 78484 || || || || || | | |||||||| ||||| ||| | || | | Sbjct 109674 GGTGAAGCACTTGCTCGACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCC 109733 Query 78485 CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTT 78544 ||| |||| || || || || ||||| | ||| ||||| ||||| || | |||| Sbjct 109734 CCA--GATG----CCAACGGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTT 109787 Query 78545 ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 78604 || | || | | || ||| | ||||| || ||||| || || || | ||| Sbjct 109788 GCCATCAAGCTTGAGAAGATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTT 109847 Query 78605 AAAGTCTCTCTCGTAAATAATAACAGAAT 78633 ||||| | ||||||| || |||||| Sbjct 109848 GAAGTCGCGGTCGTAAACGATGGCAGAAT 109876 >seq1201 Length=295393 Score = 122 bits (134), Expect = 1e-22 Identities = 434/667 (65%), Gaps = 16/667 (2%) Strand=Plus/Plus Query 48036 GGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTT 48095 || |||||||| || || |||||||| ||||| |||||||||| || || || || | Sbjct 156394 GGCAGAGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGCATCGACGATAAT--ATCCT 156451 Query 48096 --ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCAC 48153 | | | || || || | | | || || ||| | || ||||| || Sbjct 156452 CAATCACCTGCTTGCTGGGGCGGTGCTTCAGGTGAGAGTACAGAAGGCAGGCAAAGTCGG 156511 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 || ||||| ||||| | || | ||||| || || || ||||||||||| || | Sbjct 156512 TGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCGGGCATGAGAC 156571 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 |||| || |||||||| || || | ||||||| || ||||| ||||| || |||| Sbjct 156572 CACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATGCCCTCGACGG 156631 Query 48274 CCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG-CTTCGT-TGTGT-ATCCACCGTTGTG 48330 | ||||| || || | || || | ||| ||| || | || ||||| || | Sbjct 156632 CGGCAAAGGCAACGAGGCGCTGGGCGAAGGTGGACTTTGTGTCCGTGATCCAGCGCAAGG 156691 Query 48331 CCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt-- 48388 |||| ||||||||||| | || || || || || || || || |||||| || | Sbjct 156692 CCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTGAAGAGATAGGTAC 156751 Query 48389 -tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 | || || || |||| ||| || || || | ||| || | |||||||||| Sbjct 156752 GCTGGGCA-GGC--TCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGAA 156808 Query 48448 TATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCG 48507 | || || || ||||| || ||||| || || | ||| || | || ||| || || Sbjct 156809 TGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGACTTCGC 156868 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 | | || || ||| ||| |||||||| || || || || ||| || || || || | Sbjct 156869 CAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGA 156928 Query 48568 ATACATGTTTAATAAAATATTTTTCGT--TGGAAG-TCAGTTTATTCCAGTCATTGATAT 48624 | || || || || || || | | | | || || |||||||| | || || Sbjct 156929 GAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGAT 156988 Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 | || || | ||| | || ||||| ||||| || || ||||| || || || ||||| | Sbjct 156989 CCTTGGACAAATCAATCTCCTCAGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTT 157048 Query 48685 TCCATAT 48691 ||| || Sbjct 157049 GCCAAAT 157055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694655219224960