Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq456 129 7e-25 >seq456 Length=562 Score = 129 bits (142), Expect = 7e-25 Identities = 172/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 170979 TTTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTG 171038 ||||||||| | || ||| || |||||||| ||||||||||| ||| ||||| | Sbjct 266 TTTGAATGTCCAGATGATGTTTACATTCTTGACCATGCTGAAGAAGTTGGAATTGATCTC 325 Query 171039 AACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCT 171098 || || || | |||||| ||||||| | |||||||| ||| ||| | ||| Sbjct 326 CCTTACTCATGCAGAGCTGGTTCTTGTTCTTCATGTGCTGGTAAAGTTGTTGGGGGTGAA 385 Query 171099 GTTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTG 171158 ||||||||||| ||| ||||||||||||||||| ||||||||| ||||| |||| Sbjct 386 GTTGATCAATCTGATGGTTCTTTCCTTGATGATGACCAGATTGAAGGTGGTTTTGTTCTT 445 Query 171159 ACCTGCGTCTCATATCCTACAAGTGATTGTGTAATCTTGACTGAACAGGAAG-AGAAC 171215 || || || | ||||||| |||| ||| || |||| | |||||| ||||| Sbjct 446 ACTTGTGTTGCTTATCCTAAGTCTGATGTTGTTATTGAGACTCACAAGGAAGAAGAAC 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622058238523680