Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq456 82.4 9e-11 >seq456 Length=562 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 161555 TACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGGC 161614 |||||||||||| ||||| |||| || | || || ||||| || | || || Sbjct 287 TACATTCTTGACCATGCTGAAGAAGTTGGAATTGATCTCCCTTACTCATGCAGAGCTGGT 346 Query 161615 GCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 161674 ||||||| || || || || ||| | || || || || ||| || || Sbjct 347 TCTTGTTCTTCATGTGCTGGTAAAGTTGTTGGGGGTGAAGTTGATCAATCTGATGGTTCT 406 Query 161675 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCACG 161734 ||||| || |||||||| || || |||||| |||| ||||||||| ||||||| | | Sbjct 407 TTCCTTGATGATGACCAGATTGAAGGTGGTTTTGTTCTTACTTGTGTTGCTTATCCTAAG 466 Query 161735 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 161772 ||| ||| ||||||||| | || ||||| ||||| Sbjct 467 TCTGATGTTGTTATTGAGACTCACAAGGAAGAAGAACT 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557643497856480