Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq456 123 3e-23
>seq456
Length=562
Score = 123 bits (136), Expect = 3e-23
Identities = 185/262 (71%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 176128 CACCCGATGGAACTGAAACTACTTTTGAGTGTGCTGACGATCAGTATATTCTGGATGCTG 176187
|||| ||||||||| || ||||| ||| | || ||| || ||||| || ||
Sbjct 246 CACCAGATGGAACTCAAGAG---TTTGAATGTCCAGATGATGTTTACATTCTTGACCATG 302
Query 176188 CTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTG 176247
|||| |||| ||| |||| ||| ||||| ||| | |||||| | ||||| ||||
Sbjct 303 CTGAAGAAGTTGGAATTGATCTCCCTTACTCATGCAGAGCTGGTTCTTGTTCTTCATGTG 362
Query 176248 CAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGATGATGACC 176307
| || ||| | | ||| || |||||| ||| || ||||||||||||||||
Sbjct 363 CTGGTAAAGTTGTTGGGGGTGAAGTTGATCAATCTGATGGTTCTTTCCTTGATGATGACC 422
Query 176308 AGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGATTGTGTGATTG 176367
|||| || | ||||| |||| ||||||||| | ||||||| | ||| ||| ||||
Sbjct 423 AGATTGAAGGTGGTTTTGTTCTTACTTGTGTTGCTTATCCTAAGTCTGATGTTGTTATTG 482
Query 176368 AGACTGAGAAAGAAGAGGAACT 176389
||||| | || ||||| |||||
Sbjct 483 AGACTCACAAGGAAGAAGAACT 504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596295542194240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |