Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq456 123 3e-23 >seq456 Length=562 Score = 123 bits (136), Expect = 3e-23 Identities = 185/262 (71%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 176128 CACCCGATGGAACTGAAACTACTTTTGAGTGTGCTGACGATCAGTATATTCTGGATGCTG 176187 |||| ||||||||| || ||||| ||| | || ||| || ||||| || || Sbjct 246 CACCAGATGGAACTCAAGAG---TTTGAATGTCCAGATGATGTTTACATTCTTGACCATG 302 Query 176188 CTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTG 176247 |||| |||| ||| |||| ||| ||||| ||| | |||||| | ||||| |||| Sbjct 303 CTGAAGAAGTTGGAATTGATCTCCCTTACTCATGCAGAGCTGGTTCTTGTTCTTCATGTG 362 Query 176248 CAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGATGATGACC 176307 | || ||| | | ||| || |||||| ||| || |||||||||||||||| Sbjct 363 CTGGTAAAGTTGTTGGGGGTGAAGTTGATCAATCTGATGGTTCTTTCCTTGATGATGACC 422 Query 176308 AGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGATTGTGTGATTG 176367 |||| || | ||||| |||| ||||||||| | ||||||| | ||| ||| |||| Sbjct 423 AGATTGAAGGTGGTTTTGTTCTTACTTGTGTTGCTTATCCTAAGTCTGATGTTGTTATTG 482 Query 176368 AGACTGAGAAAGAAGAGGAACT 176389 ||||| | || ||||| ||||| Sbjct 483 AGACTCACAAGGAAGAAGAACT 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596295542194240