Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq643 161 7e-35 seq1544 134 1e-26 seq835 127 1e-24 seq442 127 1e-24 seq428 107 1e-18 seq632 93.3 3e-14 >seq643 Length=80414 Score = 161 bits (178), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || || ||||| || ||||||||||| ||||||||||| |||| | Sbjct 65234 CCTCCACGCAGGCGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 65293 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| || |||||||| ||||| ||||||| |||||||| || | || Sbjct 65294 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 65353 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 65354 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 65411 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||| | || || ||||| |||||||||||||| |||||||| |||||||| Sbjct 65412 CCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 65463 >seq1544 Length=892 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| |||||||| || |||||| ||||| |||||||| || Sbjct 153 CCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 212 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || | |||| ||||||||||| || ||||||||||| | ||||||||| | ||| Sbjct 213 AGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGA 272 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCAC 44289 | ||| ||||| ||| ||||| || | || ||| | |||||||| | | || || Sbjct 273 ATACCCTCCTTATCCTGGATCTT-AGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGAC 331 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | ||||| || || || || || |||||||| ||||| ||||| Sbjct 332 CTCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | |||||| |||||||| || ||||| ||||||||||| || Sbjct 377 CATACCACCACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTC 436 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | | | || || |||||||| |||||||||||||| | ||||||||| | Sbjct 437 AGCCAAAGTCCTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGG 496 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||||| | | ||||| || | || Sbjct 497 AGGGATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTC 556 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || || || || ||||| ||||| || ||||| ||||| Sbjct 557 AACCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || ||||| ||||||||||| || || || || |||| || Sbjct 627 ACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCG 686 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||| ||||||| ||| ||||| || | || | |||||||| ||| Sbjct 687 AGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGG 746 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || ||||| | || || |||||| Sbjct 747 ATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTT 806 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || ||||| |||||||| Sbjct 807 CCGGTCAGGGTTTTAACGAATATTTGCAT 835 >seq835 Length=459924 Score = 127 bits (140), Expect = 1e-24 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| |||| || |||||||| ||||| |||| Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||| || ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 159392 --CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 159335 Query 44326 GAA 44328 ||| Sbjct 159334 GAA 159332 >seq442 Length=625744 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| || |||||||| |||| ||| ||| |||| || Sbjct 417206 CACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 417265 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | ||||||||| || | || | || ||||| ||| Sbjct 417266 AAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 417325 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | || |||||||| | ||||||||||| Sbjct 417326 GATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTT 417385 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||||||||| || ||||| Sbjct 417386 GCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTCGTC 44187 |||| |||||| || ||||| |||||||||||||| | | || | ||| | || || Sbjct 417720 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGT-GCGGCCATCCTC 417778 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| || || | ||| ||||| || | || | || ||||| ||| Sbjct 417779 AAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTG 417838 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | ||||| |||| || |||||||| | || || ||||| Sbjct 417839 GATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTT 417898 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || ||||||||||| |||||||| ||||||||| Sbjct 417899 GCCAGTGAGGGTCTTGACGAAGATCTGCATGATG 417932 >seq428 Length=571 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 ||||| || | || || | || || ||||| || ||||| ||||| ||||||||| Sbjct 336 ATTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCG 395 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 || | ||| | || || |||||||| || || || ||||||||||||||||| | | Sbjct 396 GCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGA 455 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||| || || ||||| ||| || ||| | ||||||||| | | Sbjct 456 GGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGT--CGATGGTGTCGCTGCTCT 513 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || || || || || ||||| |||||||| || ||||| Sbjct 514 CGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCAT 565 >seq632 Length=500 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || |||||| ||||||||||| |||| | | | | || ||| Sbjct 231 ACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCC 172 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || ||||||||||| | ||| || || | || | ||||| || ||| Sbjct 171 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGA 112 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| || || |||| || || || || ||||| | || || || || Sbjct 111 ATCTTG-GCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTT 53 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| |||||||| ||||| Sbjct 52 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983538132988