Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1544 205 2e-47
seq428 187 6e-42
seq643 141 2e-28
seq442 141 2e-28
seq632 131 4e-25
seq835 118 3e-21
>seq1544
Length=892
Score = 205 bits (226), Expect = 2e-47
Identities = 169/206 (82%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| ||||| || || ||||| || ||||| |||||||| || || || |||
Sbjct 832 CAAATATTCGTTAAAACCCTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCTGAC 773
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct 772 ACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAGCAA 713
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||||||||||||||| || || | |||||||| || || ||| ||
Sbjct 712 CGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGTACTCTTGCTGACTACAACATC 653
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || |||||||| || ||||||||
Sbjct 652 CAGAAGGAATCAACCCTTCATCTTGT 627
Score = 181 bits (200), Expect = 3e-40
Identities = 166/210 (79%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || ||||| || ||||| |||||||||||||| || || || ||
Sbjct 604 CAGATCTTTGTTAAGACGCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGTTCTGAT 545
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || ||||| ||||| || ||||||||||||||||| |||||
Sbjct 544 ACCATCGACAACGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAGCAG 485
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| |||||||| |||||||| |||||||||||| | || || || ||| ||
Sbjct 484 AGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGAAGGACTTTGGCTGACTACAACATC 425
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || |||||||| || || ||||| |||
Sbjct 424 CAGAAGGAATCAACTCTTCACCTTGTGTTG 395
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| ||||| || || ||||| || ||||||||||| || |||||||||
Sbjct 376 CAGATCTTTGTGAAGACTCTTACCGGTAAAACTATTACCCTCGAGGTCGAGAGCTCAGAC 317
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || ||||| ||||| || || || || |||||||| |||||
Sbjct 316 ACCATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGTATTCCTCCGGATCAGCAG 257
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| || || || ||||| ||||| |||||||||||||| ||||| || ||
Sbjct 256 AGGTTGATCTTTGCGGGTAAGCAGCTGGAAGACGGAAGGACTCTTGCTGATTACAATATC 197
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 196 CAGAAGGAGTCGACCCTTCACCTTGT 171
>seq428
Length=571
Score = 187 bits (206), Expect = 6e-42
Identities = 176/224 (79%), Gaps = 3/224 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | |||||||||||||| || || || ||||| |||||||||||||| ||
Sbjct 568 AAAATGC---AGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAG 512
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| ||||||||||| || ||||| |||||||| ||||||||||| |||||||||
Sbjct 511 AGCAGCGACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCG 452
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || | || ||||| || || ||||| ||||||||| | || | ||||||
Sbjct 451 GATCAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGAT 392
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || |||| || ||||| || || ||||||||| | || ||
Sbjct 391 TACAATATCCAGAAGGAATCTACTCTTCATCTTGTTCTCAGGCT 348
>seq643
Length=80414
Score = 141 bits (156), Expect = 2e-28
Identities = 144/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||| |||||||| || |||
Sbjct 65457 CAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 65398
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 65397 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 65338
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||||||||| |||||||| || || | || || |||| || ||| ||
Sbjct 65337 CGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 65278
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 65277 CAGAAGGA 65270
>seq442
Length=625744
Score = 141 bits (156), Expect = 2e-28
Identities = 159/209 (76%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || ||||||||||||||||| || ||
Sbjct 417925 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGAT 417866
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| ||||| || || || ||||| || |||||||||
Sbjct 417865 ACCATCGACAATGTGAAGTCTAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGCAA 417806
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| ||||| |||||||| || ||||| || ||||| | || |||| | ||||| ||| |
Sbjct 417805 CGTCTTATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCAC-CTTGTCTGATTACAACAT 417747
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131
||| || ||||| || || || |||| ||
Sbjct 417746 CCAGAAGGAATCTACCCTTCA-CTTGGTT 417719
Score = 132 bits (146), Expect = 1e-25
Identities = 153/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || || || ||||| ||| | |||||||| ||||||
Sbjct 417412 CAGATTTTCGTGAAGACCCTGACCGGCAAGACGATTACCTTAGAGGTGGAGTCGTCAGAC 417353
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 417352 ACAATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 417293
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || ||||| || || || | || || |||| || ||| |
Sbjct 417292 CGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATT 417233
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 417232 CAGAAGGAGTCGACCCTCCA-CTTG 417209
Score = 118 bits (130), Expect = 3e-21
Identities = 147/199 (74%), Gaps = 7/199 (4%)
Strand=Plus/Minus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAGACACCATC 177989
|| || |||||||| || || || ||||||||||||||||| ||| ||||| |||
Sbjct 417631 GTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGC---GACACTATC 417575
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| |||||||| ||||| ||||| || || || || || || |||||||| || ||
Sbjct 417574 GACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTC 417515
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109
|||||||| || || |||||||| || || | || || |||| || ||| | || ||
Sbjct 417514 ATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCCGACTACAACATTCAGAAG 417455
Query 178110 GAATCAACACTGCATCTTG 178128
|| || || || || ||||
Sbjct 417454 GAGTCTACCCTTCA-CTTG 417437
>seq632
Length=500
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || ||||| || || ||||| || ||||| ||||| || ||||| || || |||
Sbjct 26 CAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGA--GCCCAGTG 83
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || || || || ||| ||||||||||||||||||||||| || || ||||| |
Sbjct 84 ATACTATAGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCCCCTGACCAAC 143
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || | ||||| || || |||||| | |||||||| || || | |||| || |||
Sbjct 144 AGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAACA 203
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || ||||||||
Sbjct 204 TCCAGAAGGAGTCTACCCTTCATCTTGT 231
>seq835
Length=459924
Score = 118 bits (130), Expect = 3e-21
Identities = 134/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || || ||||| ||||| || ||| ||||| ||
Sbjct 159331 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGAT 159390
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| || |||||||| || |
Sbjct 159391 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 159450
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || ||||| || || || | || || |||| || ||| |||| ||
Sbjct 159451 GATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 159510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203707078731416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |