Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq643 176 4e-39
seq442 154 1e-32
seq835 141 9e-29
seq746 89.7 5e-13
seq428 82.4 7e-11
>seq643
Length=80414
Score = 176 bits (194), Expect = 4e-39
Identities = 178/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || || || |||||||||||||| ||||| |||||||||
Sbjct 65234 CCTCCACGCAGGCGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 65293
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| |||||||| ||||||||||| ||||| | |||
Sbjct 65294 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 65353
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||| |||||||
Sbjct 65354 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 65411
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || |||||||| || ||||| ||||| |||||||||
Sbjct 65412 CCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 65461
>seq442
Length=625744
Score = 154 bits (170), Expect = 1e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | ||||| || || || ||||||||||||||| ||||||||
Sbjct 417188 GCCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGA 417247
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||||||||| |||| || |||||||| || || || || || ||||| ||||| | |||
Sbjct 417248 GAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGG 417307
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| ||| | | | ||||| ||||||||
Sbjct 417308 GATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATTGTGTCTGACGACTCCA 417366
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| | || ||||| || || ||||| ||||| ||||||||||||||
Sbjct 417367 CCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415
Score = 143 bits (158), Expect = 2e-29
Identities = 163/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | |||| || || || ||||||||||||||| |||||||||
Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| |||||||||||||| ||||| || || ||||| ||||| | ||||
Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGA 417536
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||| ||| ||| || ||| ||| | | | ||||||||| ||||||||
Sbjct 417537 ATGCCCTCCTTATCCTGGATCTTGGACTT-GACGTTGTCGATAGTGTCGCTAGACTCCAC 417595
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
||| | || || || || || || || ||||| ||
Sbjct 417596 CTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGAC 417631
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | |||| || || || |||||||| ||||| || || ||
Sbjct 417701 GCCACCGCGGAGACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGA 417760
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| | || || ||||||||||||||||| || || || || ||||| | |||
Sbjct 417761 CAAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGG 417820
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| || |||||| ||| ||| || |||| || | | | || ||| |||||||
Sbjct 417821 GATGCCCTCCTTATCCTGGATCTTAGACTTC-ACATTGTCGATGGTATCGGAAGACTCCA 417879
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || || || ||||| ||||| |||||||||
Sbjct 417880 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 417929
>seq835
Length=459924
Score = 141 bits (156), Expect = 9e-29
Identities = 143/184 (78%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||||||||| |||| || ||||||||||||||||| |
Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 159392 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 159335
Query 41851 GAAA 41854
||||
Sbjct 159334 GAAA 159331
>seq746
Length=525449
Score = 89.7 bits (98), Expect = 5e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 85806 GCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCGAC 85865
|| ||||| ||||| |||||| |||| || |||||| |||||||| |||||||||
Sbjct 257153 GCCCCTCGCTCCGGTCTCGCCTCCAAGAACTTCATCGACACCGGCGCCGGCGTCATCGAC 257094
Query 85866 GCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|| ||||||||||| | |||| || | ||||||||||||| |||
Sbjct 257093 GCGGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 257047
>seq428
Length=571
Score = 82.4 bits (90), Expect = 7e-11
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||| || || |||||||| || || || |||| | |||||| | || ||
Sbjct 357 ACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCA 416
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|||||||| || ||||| |||| ||||| || |||| || | | || ||||| ||
Sbjct 417 AGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCT-TG 475
Query 41774 ATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830
| | || | ||| || | ||| |||||||| ||| ||||| | || || |||
Sbjct 476 AATCTTGGTCTTGACATTGTCGATG--GTGTCGCTGCTCTCGACCTCGAGGGTGATGGTT 533
Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || || |||||||||||||| ||
Sbjct 534 TTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462294961956800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |