Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq866 91.5 1e-13
>seq866
Length=7889
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | ||||||||||| |||||||| ||||| |
Sbjct 2643 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2584
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| || || ||||| ||| | || | | ||||||||| ||
Sbjct 2583 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 2524
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| || || | | ||| |||||| | |||
Sbjct 2523 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACC 2464
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163
|| | ||| |||||||||||||| | || |||||
Sbjct 2463 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 2429
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | || |||||||| || ||||| ||||| |
Sbjct 2357 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 2298
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||| ||||||||||| || |||| || | |||||| || |||
Sbjct 2297 AGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGA 2238
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| || || | | ||| ||||| | |||
Sbjct 2237 ATGCCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACC 2178
Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151
|| | || ||||||||||||||
Sbjct 2177 TCGAGAGTGATGGTCTTGCCGGT 2155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422249838909404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |