Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq866 127 2e-24
seq766 91.5 1e-13
>seq866
Length=7889
Score = 127 bits (140), Expect = 2e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | |||||||| || || |||||||| ||| | ||||| |||||
Sbjct 2339 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 2280
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|||||||| |||||| | |||||||||||||||||||| || ||||||||||||||| |
Sbjct 2279 AGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGA 2220
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | ||||||||||| || | || |||
Sbjct 2219 ATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTG 2160
Query 118710 CCGGT 118714
|||||
Sbjct 2159 CCGGT 2155
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || |||||||| ||||||| ||||| ||| || | ||| ||||||
Sbjct 3069 GTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAACTGCTTTCCA 3010
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| ||||||||||| |||||||| || |||||||| || ||| || ||
Sbjct 3009 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTAGACTTC 2950
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | || | ||||| | ||||||||| | ||| | ||| ||||| |||| ||
Sbjct 2949 ACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTCTTGCCAGTCAACGTC 2890
Query 118722 TTTACAAAAATCTGCAT 118738
|| || || ||||||||
Sbjct 2889 TTCACGAAGATCTGCAT 2873
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| || ||||| || ||||||||||| ||| | ||||| ||||||
Sbjct 2625 ACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 2566
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || ||||| |||| | ||||||||| || ||||| |||||||||||||| |
Sbjct 2565 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 2506
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | ||||||||| | ||| | || |||
Sbjct 2505 ATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 2446
Query 118710 CCGGTCAGAGTTTTTAC 118726
||||| || || || ||
Sbjct 2445 CCGGTGAGGGTCTTGAC 2429
>seq766
Length=50960
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | ||||| ||||||||||| || |||||| ||||
Sbjct 293 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATC 234
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| ||||| || |||||||||||||| || || || || | |||
Sbjct 233 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 174
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||| | | ||||||||| | ||| | || || || ||||| || || || |||
Sbjct 173 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433820782386748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |