Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1170 361 5e-95 seq866 113 4e-20 seq766 82.4 7e-11 >seq1170 Length=97779 Score = 361 bits (400), Expect = 5e-95 Identities = 1202/1855 (65%), Gaps = 52/1855 (3%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || || || |||||||||||||| ||||| | |||||| | || || || Sbjct 61035 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTG 60976 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || |||| | ||||| | |||| ||||| ||| || || Sbjct 60975 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATG 60916 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || |||||||| ||||| | | | || ||| || |||||||| |||||| Sbjct 60915 AAGGCACCACGATCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATTTCCCAGACGGTC 60856 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 |||||||| | ||| ||| || || ||| |||| ||||| ||||| | | Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGAACCGTTCTCG 60796 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | |||| |||||| || ||| || | ||| || | | Sbjct 60795 GCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTCAGC 60736 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504 || |||| || || || |||||||||| | || ||||| ||||| |||||||| Sbjct 60735 AGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAG 60676 Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | || ||||| | || ||||| |||| ||||| | || || || || ||||| Sbjct 60675 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATG 60616 Query 22565 GGCGCCAACAGTAGCGA---GTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTT---GA 22616 || || |||| ||| | ||| | | ||||||| |||| ||| ||| | || Sbjct 60615 GGAGC-AACA--AGCAAACTGTTGCGAACACCGTGCTCCTTGA---TTTGCTCCTTCAGA 60562 Query 22617 GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--A 22674 | || ||||||||| || || || ||| | ||||| |||||| ||||| || | | Sbjct 60561 GAGTC--CCAGTCCCAGAGGTCAGAGGGCTTGACATT---CCACATGTCGTACTGAAGGA 60507 Query 22675 CACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAG 22734 || | | || ||| ||| |||||||| ||| | ||| | | ||| || Sbjct 60506 TACCCTGGGAGATA--GGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAG 60449 Query 22735 TT---CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA 22791 || || | | | | | ||| ||| || || ||||| || || ||||| || | Sbjct 60448 TTGAACGGACATGGTC---AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAG 60392 Query 22792 TTCGGCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCA 22847 ||| || || ||| ||| | ||||| || | | ||| || || || | Sbjct 60391 ATCGCGAGCCTCAGGAGAC----TCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAA 60336 Query 22848 TACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCG 22903 |||||| || || | |||||| || |||| || || || |||| ||| Sbjct 60335 GACCCTGGACACCAAGACCGATGGGGCGGTGACGCATGTTG----CTGTTGCGAGCCTCA 60280 Query 22904 GGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTT 22963 || | || || || ||| || | |||||| ||| | || | | || Sbjct 60279 GGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTG 60220 Query 22964 ATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCG-ATTGTA--CAACAAACTTGTTGACG 23020 | | || |||||||| ||| |||||| |||| || | | | Sbjct 60219 ACCTCGTGAAGCTTCTGGAAATCGTAAACACCCTCATTGTAGTCAACGAAGGTAGGCAGG 60160 Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || | ||||| | ||||| || || ||||| || || |||||| | ||| || Sbjct 60159 GCAAGAGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCA 60100 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||| | || || || | || | |||||||| || || || Sbjct 60099 GTGCAGAGGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCG 60040 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||| |||||| | || |||| ||||| ||| | ||||| ||| || | Sbjct 60039 GCATCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTAC 59980 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTA 23259 || | |||| || | | ||| || ||| ||| || ||||||||||| ||| Sbjct 59979 CAAAGCTTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTA 59921 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 ||| || ||||| || | ||||| ||||| ||||||||||| | | | || ||||| Sbjct 59920 CAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACAT 59861 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| |||| | || || || || | |||| || ||||| || ||||| || || Sbjct 59860 GAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGC 59801 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 | ||| || || ||||| || |||||||| |||||| |||||| ||| |||| || Sbjct 59800 GAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAA 59741 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || || || || ||||| ||||| ||||| | ||| || || || || | ||| || Sbjct 59740 CTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTT 59681 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||| ||||| |||||||| || || ||||||||| | || | ||||| || | || || Sbjct 59680 GCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCC 59621 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 ||| || | |||| ||| || | || || | || || | |||| ||| Sbjct 59620 GTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTT 59561 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || || ||||| || || || || ||||| ||||| || || ||||||||||| Sbjct 59560 GAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGAT 59501 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-G 23738 ||||| ||| ||| || || | |||| | ||| || ||||||| || || || | Sbjct 59500 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAG 59442 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | ||| |||| ||| ||||| ||| |||||| || ||| | | ||||| || | Sbjct 59441 GGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGT 59382 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 |||| || |||||| || |||| || || || ||||||| ||||| ||||| | Sbjct 59381 TGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGA 59322 Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 |||||| || ||||||||| | | ||||| | |||| ||| ||||| | | || Sbjct 59321 TCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGATCTCTCCA 59262 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || || || || | ||||| ||||| || |||| || ||||| || Sbjct 59261 GAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGA 59207 >seq866 Length=7889 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| ||||| ||| | || || || | || Sbjct 2873 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTCGAGTCATCA 2932 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| ||||| || | || ||||||||| Sbjct 2933 GACACGATTGACAACGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 2992 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||||||||||| | || ||||||| || ||| Sbjct 2993 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTACAAC 3052 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || |||||||| || || Sbjct 3053 ATCCAGAAGGAATCCACCCTTCATCTCGTCCT 3084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || ||||| |||| |||||| | || Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || || ||||| || | || ||||||||| Sbjct 2705 GACACCATTGACAACGTTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 2764 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || ||| | || ||| | || || || || ||| Sbjct 2765 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAAC 2824 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || ||||| || || | ||| | || |||| Sbjct 2825 ATCCAGAAGGAGTCTACCCTGCATCTTGTCCTCCGTCTGCGTGGTGGTA 2873 >seq766 Length=50960 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| ||||| || || || || ||| | || || || | ||||||| | Sbjct 114 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGAT 173 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | || ||||||||| ||| | || |||||||||||||| | Sbjct 174 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 233 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGAC 31348 || ||||||||||| ||| | || ||| Sbjct 234 GATCTTCGCTGGCAAGCAGCTCGAGGAC 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756264386480