Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06-
15] 1,819 sequences; 35,034,269 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1170 361 5e-95
seq866 113 4e-20
seq766 82.4 7e-11
>seq1170
Length=97779
Score = 361 bits (400), Expect = 5e-95
Identities = 1202/1855 (65%), Gaps = 52/1855 (3%)
Strand=Plus/Minus
Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204
|| || || || |||||||||||||| ||||| | |||||| | || || ||
Sbjct 61035 GTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAGTGCATGCTG 60976
Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264
|| | || || |||| | ||||| | |||| ||||| ||| || ||
Sbjct 60975 GTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCAATG 60916
Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324
|| || || |||||||| ||||| | | | || ||| || |||||||| ||||||
Sbjct 60915 AAGGCACCACGATCGGCAGCCATCTGAACAACGGTGCGCTGGGAGATTTCCCAGACGGTC 60856
Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384
|||||||| | ||| ||| || || ||| |||| ||||| ||||| | |
Sbjct 60855 TTGTACAGAGCCTTGACCTCGGCGGGGATGTTAGGGATGTTCTGAACGGAACCGTTCTCG 60796
Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444
||||| || || || | |||| |||||| || ||| || | ||| || | |
Sbjct 60795 GCGATGATACGGTTCTTCATGGCATCGGACCACAAGCCCATGTCGACAAGATCCTTCAGC 60736
Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504
|| |||| || || || |||||||||| | || ||||| ||||| ||||||||
Sbjct 60735 AGCCAGGGGTTGACAACCTGGAACTCGCCGGCGAGAACACGGCGCTGGTAGATGTTGGAG 60676
Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564
||| | || ||||| | || ||||| |||| ||||| | || || || || |||||
Sbjct 60675 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATG 60616
Query 22565 GGCGCCAACAGTAGCGA---GTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTT---GA 22616
|| || |||| ||| | ||| | | ||||||| |||| ||| ||| | ||
Sbjct 60615 GGAGC-AACA--AGCAAACTGTTGCGAACACCGTGCTCCTTGA---TTTGCTCCTTCAGA 60562
Query 22617 GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--A 22674
| || ||||||||| || || || ||| | ||||| |||||| ||||| || | |
Sbjct 60561 GAGTC--CCAGTCCCAGAGGTCAGAGGGCTTGACATT---CCACATGTCGTACTGAAGGA 60507
Query 22675 CACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAG 22734
|| | | || ||| ||| |||||||| ||| | ||| | | ||| ||
Sbjct 60506 TACCCTGGGAGATA--GGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAG 60449
Query 22735 TT---CGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAA 22791
|| || | | | | | ||| ||| || || ||||| || || ||||| || |
Sbjct 60448 TTGAACGGACATGGTC---AGAGCGGCGTGGTAGATGGTCTCAAAAATCTTCTTATTGAG 60392
Query 22792 TTCGGCGGC----GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCA 22847
||| || || ||| ||| | ||||| || | | ||| || || || |
Sbjct 60391 ATCGCGAGCCTCAGGAGAC----TCGAAAGGCATGCGGAGGGCGAGGAAGGCATCAGCAA 60336
Query 22848 TACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCG 22903
|||||| || || | |||||| || |||| || || || |||| |||
Sbjct 60335 GACCCTGGACACCAAGACCGATGGGGCGGTGACGCATGTTG----CTGTTGCGAGCCTCA 60280
Query 22904 GGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTT 22963
|| | || || || ||| || | |||||| ||| | || | | ||
Sbjct 60279 GGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGAACAACGACCTGAGTG 60220
Query 22964 ATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCG-ATTGTA--CAACAAACTTGTTGACG 23020
| | || |||||||| ||| |||||| |||| || | | |
Sbjct 60219 ACCTCGTGAAGCTTCTGGAAATCGTAAACACCCTCATTGTAGTCAACGAAGGTAGGCAGG 60160
Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080
|| | ||||| | ||||| || || ||||| || || |||||| | ||| ||
Sbjct 60159 GCAAGAGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCGCAGTACTCAATAATCTCA 60100
Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140
|| || || ||| | || || || | || | |||||||| || || ||
Sbjct 60099 GTGCAGAGGTTGGAGCTGCGGATGGTTCCGAGGTTCTTTTGGTTGCTCTTGCGGTTCGCG 60040
Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200
| ||||||||| |||||| | || |||| ||||| ||| | ||||| ||| || |
Sbjct 60039 GCATCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTAC 59980
Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTA 23259
|| | |||| || | | ||| || ||| ||| || ||||||||||| |||
Sbjct 59979 CAAAGCTTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCCTCGCGCTCGTACTTTTCGTA 59921
Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319
||| || ||||| || | ||||| ||||| ||||||||||| | | | || |||||
Sbjct 59920 CAAGGCCTCAAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGGCACAT 59861
Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379
||| |||| | || || || || | |||| || ||||| || ||||| || ||
Sbjct 59860 GAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGC 59801
Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439
| ||| || || ||||| || |||||||| |||||| |||||| ||| |||| ||
Sbjct 59800 GAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAA 59741
Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499
|| || || || || ||||| ||||| ||||| | ||| || || || || | ||| ||
Sbjct 59740 CTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTT 59681
Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559
||| ||||| |||||||| || || ||||||||| | || | ||||| || | || ||
Sbjct 59680 GCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACGCC 59621
Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619
||| || | |||| ||| || | || || | || || | |||| |||
Sbjct 59620 GTTAGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCAGTGGCACGGATACGGTGAGCGTT 59561
Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679
|| || ||||| || || || || ||||| ||||| || || |||||||||||
Sbjct 59560 GAGGCCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGAT 59501
Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG-G 23738
||||| ||| ||| || || | |||| | ||| || ||||||| || || || |
Sbjct 59500 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAG 59442
Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798
| ||| |||| ||| ||||| ||| |||||| || ||| | | ||||| || |
Sbjct 59441 GGGTACCGGCATTGAAAAGTGTGGGGGAGGCGTGTGTGAAGAACTTGCTGGACATGAGGT 59382
Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858
|||| || |||||| || |||| || || || ||||||| ||||| ||||| |
Sbjct 59381 TGTAGGTCTCGATGACGCGCTCAACATCGTCGCCCCAGATACCGACTGCGACACGCATGA 59322
Query 23859 TCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918
|||||| || ||||||||| | | ||||| | |||| ||| ||||| | | ||
Sbjct 59321 TCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGCAGGTATGATCTCTCCA 59262
Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
|| || || || || || | ||||| ||||| || |||| || ||||| ||
Sbjct 59261 GAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCAGA 59207
>seq866
Length=7889
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| ||||| ||||| ||| | || || || | ||
Sbjct 2873 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTCGAGTCATCA 2932
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||| ||||| || | || |||||||||
Sbjct 2933 GACACGATTGACAACGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 2992
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || |||||||| || ||||||||||| | || ||||||| || |||
Sbjct 2993 CAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTACAAC 3052
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||||| || |||||||| || ||
Sbjct 3053 ATCCAGAAGGAATCCACCCTTCATCTCGTCCT 3084
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || ||||| |||| |||||| | ||
Sbjct 2645 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCA 2704
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || || || || ||||| || | || |||||||||
Sbjct 2705 GACACCATTGACAACGTTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCAG 2764
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||| || || ||| | || ||| | || || || || |||
Sbjct 2765 CAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAAC 2824
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || || || || ||||| || || | ||| | || ||||
Sbjct 2825 ATCCAGAAGGAGTCTACCCTGCATCTTGTCCTCCGTCTGCGTGGTGGTA 2873
>seq766
Length=50960
Score = 82.4 bits (90), Expect = 7e-11
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260
|||||| ||||| ||||| || || || || ||| | || || || | ||||||| |
Sbjct 114 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGAT 173
Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320
||| | ||||| | || ||||||||| ||| | || |||||||||||||| |
Sbjct 174 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 233
Query 31321 AATATTCGCTGGCAAACAGTTGGAAGAC 31348
|| ||||||||||| ||| | || |||
Sbjct 234 GATCTTCGCTGGCAAGCAGCTCGAGGAC 261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445756264386480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |